Gene : Potri.005G038700 P. trichocarpa v3.0
Defline:  (1 of 2) PTHR30373:SF2 - UPF0603 PROTEIN YGCG Genomic Order:  387
Name:  ? Potri.005G038700 Secondary Identifier:  ? PAC:27029692
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PWY-5083 Populus trichocarpa pathologic  
Ptrichocarpa PWY-6348 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.005G038700 0.5kb upstream 0.5kb upstream 3230 true Chr05: 2827476-2830705 Populus trichocarpa
Potri.005G038700 0.5kb upstream 0.5kb upstream 500 false Chr05: 2827476-2827975 Populus trichocarpa
Potri.005G038700 0.5kb downstream 0.5kb downstream 3230 true Chr05: 2827976-2831205 Populus trichocarpa
Potri.005G038700 0.5kb downstream 0.5kb downstream 500 false Chr05: 2830706-2831205 Populus trichocarpa
Potri.005G038700 1.0kb upstream 1.0kb upstream 3730 true Chr05: 2826976-2830705 Populus trichocarpa
Potri.005G038700 1.0kb upstream 1.0kb upstream 1000 false Chr05: 2826976-2827975 Populus trichocarpa
Potri.005G038700 1.0kb downstream 1.0kb downstream 3730 true Chr05: 2827976-2831705 Populus trichocarpa
Potri.005G038700 1.0kb downstream 1.0kb downstream 1000 false Chr05: 2830706-2831705 Populus trichocarpa
Potri.005G038700 2.0kb upstream 2.0kb upstream 4730 true Chr05: 2825976-2830705 Populus trichocarpa
Potri.005G038700 2.0kb upstream 2.0kb upstream 2000 false Chr05: 2825976-2827975 Populus trichocarpa
Potri.005G038700 2.0kb downstream 2.0kb downstream 4730 true Chr05: 2827976-2832705 Populus trichocarpa
Potri.005G038700 2.0kb downstream 2.0kb downstream 2000 false Chr05: 2830706-2832705 Populus trichocarpa
Potri.005G038700 5.0kb upstream 5.0kb upstream 7730 true Chr05: 2822976-2830705 Populus trichocarpa
Potri.005G038700 5.0kb upstream 5.0kb upstream 5000 false Chr05: 2822976-2827975 Populus trichocarpa
Potri.005G038700 5.0kb downstream 5.0kb downstream 7730 true Chr05: 2827976-2835705 Populus trichocarpa
Potri.005G038700 5.0kb downstream 5.0kb downstream 5000 false Chr05: 2830706-2835705 Populus trichocarpa
Potri.005G038700 10.0kb upstream 10.0kb upstream 12730 true Chr05: 2817976-2830705 Populus trichocarpa
Potri.005G038700 10.0kb upstream 10.0kb upstream 10000 false Chr05: 2817976-2827975 Populus trichocarpa
Potri.005G038700 10.0kb downstream 10.0kb downstream 12730 true Chr05: 2827976-2840705 Populus trichocarpa
Potri.005G038700 10.0kb downstream 10.0kb downstream 10000 false Chr05: 2830706-2840705 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.881        
cufflinks 2.782        
cufflinks 0.072     Low Low
cufflinks 24.523     High  
cufflinks 0.048     Low Low
cufflinks 46.605     High High
cufflinks 26.705     High  
cufflinks 9.908     High  
cufflinks 33.583     High High
cufflinks 5.203        
cufflinks 16.252     High  
cufflinks 4.037        
cufflinks 11.188     High  
cufflinks 8.697     High  
cufflinks 24.228     High  
cufflinks 5.386        
cufflinks 0.018     Low Low
cufflinks 3.853        
cufflinks 4.384        
cufflinks 4.749        
cufflinks 0.057     Low Low
cufflinks 9.054     High  
cufflinks 2.994        
cufflinks 5.085        
cufflinks 9.301     High  
cufflinks 21.288        
cufflinks 26.836     High  
cufflinks 28.236     High High
cufflinks 20.243        
cufflinks 22.245        

0 Strain