Gene : Potri.005G226100 P. trichocarpa v3.0
Defline:  (1 of 2) K12667 - oligosaccharyltransferase complex subunit delta (ribophorin II) (SWP1, RPN2) Genomic Order:  2261
Name:  ? Potri.005G226100 Secondary Identifier:  ? PAC:27031791
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.005G226100 0.5kb upstream 0.5kb upstream 8617 true Chr05: 23634027-23642643 Populus trichocarpa
Potri.005G226100 0.5kb upstream 0.5kb upstream 500 false Chr05: 23642144-23642643 Populus trichocarpa
Potri.005G226100 0.5kb downstream 0.5kb downstream 8617 true Chr05: 23633527-23642143 Populus trichocarpa
Potri.005G226100 0.5kb downstream 0.5kb downstream 500 false Chr05: 23633527-23634026 Populus trichocarpa
Potri.005G226100 1.0kb upstream 1.0kb upstream 9117 true Chr05: 23634027-23643143 Populus trichocarpa
Potri.005G226100 1.0kb upstream 1.0kb upstream 1000 false Chr05: 23642144-23643143 Populus trichocarpa
Potri.005G226100 1.0kb downstream 1.0kb downstream 9117 true Chr05: 23633027-23642143 Populus trichocarpa
Potri.005G226100 1.0kb downstream 1.0kb downstream 1000 false Chr05: 23633027-23634026 Populus trichocarpa
Potri.005G226100 2.0kb upstream 2.0kb upstream 10117 true Chr05: 23634027-23644143 Populus trichocarpa
Potri.005G226100 2.0kb upstream 2.0kb upstream 2000 false Chr05: 23642144-23644143 Populus trichocarpa
Potri.005G226100 2.0kb downstream 2.0kb downstream 10117 true Chr05: 23632027-23642143 Populus trichocarpa
Potri.005G226100 2.0kb downstream 2.0kb downstream 2000 false Chr05: 23632027-23634026 Populus trichocarpa
Potri.005G226100 5.0kb upstream 5.0kb upstream 13117 true Chr05: 23634027-23647143 Populus trichocarpa
Potri.005G226100 5.0kb upstream 5.0kb upstream 5000 false Chr05: 23642144-23647143 Populus trichocarpa
Potri.005G226100 5.0kb downstream 5.0kb downstream 13117 true Chr05: 23629027-23642143 Populus trichocarpa
Potri.005G226100 5.0kb downstream 5.0kb downstream 5000 false Chr05: 23629027-23634026 Populus trichocarpa
Potri.005G226100 10.0kb upstream 10.0kb upstream 18117 true Chr05: 23634027-23652143 Populus trichocarpa
Potri.005G226100 10.0kb upstream 10.0kb upstream 10000 false Chr05: 23642144-23652143 Populus trichocarpa
Potri.005G226100 10.0kb downstream 10.0kb downstream 18117 true Chr05: 23624027-23642143 Populus trichocarpa
Potri.005G226100 10.0kb downstream 10.0kb downstream 10000 false Chr05: 23624027-23634026 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.631        
cufflinks 6.683        
cufflinks 4.26       Low
cufflinks 7.715        
cufflinks 7.328        
cufflinks 6.286        
cufflinks 9.806       High
cufflinks 6.861        
cufflinks 9.448       High
cufflinks 7.304        
cufflinks 8.202        
cufflinks 5.762        
cufflinks 5.272        
cufflinks 7.236        
cufflinks 4.67        
cufflinks 4.34       Low
cufflinks 5.499        
cufflinks 2.478       Low
cufflinks 4.387       Low
cufflinks 5.551        
cufflinks 6.585        
cufflinks 6.42        
cufflinks 7.706        
cufflinks 7.015        
cufflinks 46.886     High  
cufflinks 43.567     High  
cufflinks 43.912     High  
cufflinks 47.737     High  
cufflinks 52.483     High High
cufflinks 43.86     High  

0 Strain