Gene : Potri.005G248200 P. trichocarpa v3.0
Defline:  (1 of 1) PF01593//PF04433 - Flavin containing amine oxidoreductase (Amino_oxidase) // SWIRM domain (SWIRM) Genomic Order:  2482
Name:  ? Potri.005G248200 Secondary Identifier:  ? PAC:27031446
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PWY-6441 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.005G248200 0.5kb upstream 0.5kb upstream 2972 true Chr05: 25170127-25173098 Populus trichocarpa
Potri.005G248200 0.5kb upstream 0.5kb upstream 500 false Chr05: 25172599-25173098 Populus trichocarpa
Potri.005G248200 0.5kb downstream 0.5kb downstream 2972 true Chr05: 25169627-25172598 Populus trichocarpa
Potri.005G248200 0.5kb downstream 0.5kb downstream 500 false Chr05: 25169627-25170126 Populus trichocarpa
Potri.005G248200 1.0kb upstream 1.0kb upstream 3472 true Chr05: 25170127-25173598 Populus trichocarpa
Potri.005G248200 1.0kb upstream 1.0kb upstream 1000 false Chr05: 25172599-25173598 Populus trichocarpa
Potri.005G248200 1.0kb downstream 1.0kb downstream 3472 true Chr05: 25169127-25172598 Populus trichocarpa
Potri.005G248200 1.0kb downstream 1.0kb downstream 1000 false Chr05: 25169127-25170126 Populus trichocarpa
Potri.005G248200 2.0kb upstream 2.0kb upstream 4472 true Chr05: 25170127-25174598 Populus trichocarpa
Potri.005G248200 2.0kb upstream 2.0kb upstream 2000 false Chr05: 25172599-25174598 Populus trichocarpa
Potri.005G248200 2.0kb downstream 2.0kb downstream 4472 true Chr05: 25168127-25172598 Populus trichocarpa
Potri.005G248200 2.0kb downstream 2.0kb downstream 2000 false Chr05: 25168127-25170126 Populus trichocarpa
Potri.005G248200 5.0kb upstream 5.0kb upstream 7472 true Chr05: 25170127-25177598 Populus trichocarpa
Potri.005G248200 5.0kb upstream 5.0kb upstream 5000 false Chr05: 25172599-25177598 Populus trichocarpa
Potri.005G248200 5.0kb downstream 5.0kb downstream 7472 true Chr05: 25165127-25172598 Populus trichocarpa
Potri.005G248200 5.0kb downstream 5.0kb downstream 5000 false Chr05: 25165127-25170126 Populus trichocarpa
Potri.005G248200 10.0kb upstream 10.0kb upstream 12472 true Chr05: 25170127-25182598 Populus trichocarpa
Potri.005G248200 10.0kb upstream 10.0kb upstream 10000 false Chr05: 25172599-25182598 Populus trichocarpa
Potri.005G248200 10.0kb downstream 10.0kb downstream 12472 true Chr05: 25160127-25172598 Populus trichocarpa
Potri.005G248200 10.0kb downstream 10.0kb downstream 10000 false Chr05: 25160127-25170126 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.172        
cufflinks 2.105        
cufflinks 1.419       Low
cufflinks 6.207       High
cufflinks 1.32       Low
cufflinks 2.789        
cufflinks 2.193        
cufflinks 2.005        
cufflinks 2.66        
cufflinks 4.012       High
cufflinks 2.481        
cufflinks 4.075       High
cufflinks 3.005        
cufflinks 1.729        
cufflinks 1.837        
cufflinks 1.192       Low
cufflinks 4.708       High
cufflinks 3.024        
cufflinks 4.298       High
cufflinks 1.934        
cufflinks 1.601        
cufflinks 1.209       Low
cufflinks 4.059       High
cufflinks 3.559        
cufflinks 4.009        
cufflinks 4.003        
cufflinks 4.515        
cufflinks 5.678        
cufflinks 5.973       High
cufflinks 4.309        

0 Strain