Gene : Potri.005G199100 P. trichocarpa v3.0
Defline:  (1 of 2) 2.5.1.55 - 3-deoxy-8-phosphooctulonate synthase / Phospho-2-keto-3-deoxyoctonate aldolase Genomic Order:  1991
Name:  ? Potri.005G199100 Secondary Identifier:  ? PAC:27030239
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PWY-1269 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.005G199100 0.5kb upstream 0.5kb upstream 6593 true Chr05: 21480531-21487123 Populus trichocarpa
Potri.005G199100 0.5kb upstream 0.5kb upstream 500 false Chr05: 21486624-21487123 Populus trichocarpa
Potri.005G199100 0.5kb downstream 0.5kb downstream 6593 true Chr05: 21480031-21486623 Populus trichocarpa
Potri.005G199100 0.5kb downstream 0.5kb downstream 500 false Chr05: 21480031-21480530 Populus trichocarpa
Potri.005G199100 1.0kb upstream 1.0kb upstream 7093 true Chr05: 21480531-21487623 Populus trichocarpa
Potri.005G199100 1.0kb upstream 1.0kb upstream 1000 false Chr05: 21486624-21487623 Populus trichocarpa
Potri.005G199100 1.0kb downstream 1.0kb downstream 7093 true Chr05: 21479531-21486623 Populus trichocarpa
Potri.005G199100 1.0kb downstream 1.0kb downstream 1000 false Chr05: 21479531-21480530 Populus trichocarpa
Potri.005G199100 2.0kb upstream 2.0kb upstream 8093 true Chr05: 21480531-21488623 Populus trichocarpa
Potri.005G199100 2.0kb upstream 2.0kb upstream 2000 false Chr05: 21486624-21488623 Populus trichocarpa
Potri.005G199100 2.0kb downstream 2.0kb downstream 8093 true Chr05: 21478531-21486623 Populus trichocarpa
Potri.005G199100 2.0kb downstream 2.0kb downstream 2000 false Chr05: 21478531-21480530 Populus trichocarpa
Potri.005G199100 5.0kb upstream 5.0kb upstream 11093 true Chr05: 21480531-21491623 Populus trichocarpa
Potri.005G199100 5.0kb upstream 5.0kb upstream 5000 false Chr05: 21486624-21491623 Populus trichocarpa
Potri.005G199100 5.0kb downstream 5.0kb downstream 11093 true Chr05: 21475531-21486623 Populus trichocarpa
Potri.005G199100 5.0kb downstream 5.0kb downstream 5000 false Chr05: 21475531-21480530 Populus trichocarpa
Potri.005G199100 10.0kb upstream 10.0kb upstream 16093 true Chr05: 21480531-21496623 Populus trichocarpa
Potri.005G199100 10.0kb upstream 10.0kb upstream 10000 false Chr05: 21486624-21496623 Populus trichocarpa
Potri.005G199100 10.0kb downstream 10.0kb downstream 16093 true Chr05: 21470531-21486623 Populus trichocarpa
Potri.005G199100 10.0kb downstream 10.0kb downstream 10000 false Chr05: 21470531-21480530 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.603        
cufflinks 0.272       Low
cufflinks 0.348       Low
cufflinks 0.395        
cufflinks 0.386        
cufflinks 0.668        
cufflinks 0.324       Low
cufflinks 0.438        
cufflinks 0.699       High
cufflinks 0.353       Low
cufflinks 0.665        
cufflinks 0.612        
cufflinks 0.717       High
cufflinks 0.743       High
cufflinks 0.605        
cufflinks 0.637        
cufflinks 0.643        
cufflinks 0.378        
cufflinks 0.307       Low
cufflinks 0.334       Low
cufflinks 0.367        
cufflinks 0.73       High
cufflinks 0.69        
cufflinks 0.649        
cufflinks 3.174        
cufflinks 4.303        
cufflinks 5.348        
cufflinks 5.029        
cufflinks 6.448       High
cufflinks 3.713        

0 Strain