Gene : Potri.005G083100 P. trichocarpa v3.0
Defline:  (1 of 1) 2.3.3.13 - 2-isopropylmalate synthase / Isopropylmalate synthetase Genomic Order:  831
Name:  ? Potri.005G083100 Secondary Identifier:  ? PAC:27028689
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa BRANCHED-CHAIN-AA-SYN-PWY Populus trichocarpa pathologic  
Ptrichocarpa LEUSYN-PWY Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.005G083100 0.5kb upstream 0.5kb upstream 6559 true Chr05: 6137497-6144055 Populus trichocarpa
Potri.005G083100 0.5kb upstream 0.5kb upstream 500 false Chr05: 6143556-6144055 Populus trichocarpa
Potri.005G083100 0.5kb downstream 0.5kb downstream 6559 true Chr05: 6136997-6143555 Populus trichocarpa
Potri.005G083100 0.5kb downstream 0.5kb downstream 500 false Chr05: 6136997-6137496 Populus trichocarpa
Potri.005G083100 1.0kb upstream 1.0kb upstream 7059 true Chr05: 6137497-6144555 Populus trichocarpa
Potri.005G083100 1.0kb upstream 1.0kb upstream 1000 false Chr05: 6143556-6144555 Populus trichocarpa
Potri.005G083100 1.0kb downstream 1.0kb downstream 7059 true Chr05: 6136497-6143555 Populus trichocarpa
Potri.005G083100 1.0kb downstream 1.0kb downstream 1000 false Chr05: 6136497-6137496 Populus trichocarpa
Potri.005G083100 2.0kb upstream 2.0kb upstream 8059 true Chr05: 6137497-6145555 Populus trichocarpa
Potri.005G083100 2.0kb upstream 2.0kb upstream 2000 false Chr05: 6143556-6145555 Populus trichocarpa
Potri.005G083100 2.0kb downstream 2.0kb downstream 8059 true Chr05: 6135497-6143555 Populus trichocarpa
Potri.005G083100 2.0kb downstream 2.0kb downstream 2000 false Chr05: 6135497-6137496 Populus trichocarpa
Potri.005G083100 5.0kb upstream 5.0kb upstream 11059 true Chr05: 6137497-6148555 Populus trichocarpa
Potri.005G083100 5.0kb upstream 5.0kb upstream 5000 false Chr05: 6143556-6148555 Populus trichocarpa
Potri.005G083100 5.0kb downstream 5.0kb downstream 11059 true Chr05: 6132497-6143555 Populus trichocarpa
Potri.005G083100 5.0kb downstream 5.0kb downstream 5000 false Chr05: 6132497-6137496 Populus trichocarpa
Potri.005G083100 10.0kb upstream 10.0kb upstream 16059 true Chr05: 6137497-6153555 Populus trichocarpa
Potri.005G083100 10.0kb upstream 10.0kb upstream 10000 false Chr05: 6143556-6153555 Populus trichocarpa
Potri.005G083100 10.0kb downstream 10.0kb downstream 16059 true Chr05: 6127497-6143555 Populus trichocarpa
Potri.005G083100 10.0kb downstream 10.0kb downstream 10000 false Chr05: 6127497-6137496 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.159        
cufflinks 1.567       Low
cufflinks 1.772       Low
cufflinks 2.636        
cufflinks 3.446        
cufflinks 3.376        
cufflinks 1.691       Low
cufflinks 2.26        
cufflinks 3.159        
cufflinks 2.088       Low
cufflinks 2.503        
cufflinks 4.593       High
cufflinks 2.949        
cufflinks 3.845        
cufflinks 3.898       High
cufflinks 2.683        
cufflinks 2.822        
cufflinks 3.144        
cufflinks 4.068       High
cufflinks 3.11        
cufflinks 2.131        
cufflinks 2.746        
cufflinks 4.9       High
cufflinks 3.443        
cufflinks 2.518        
cufflinks 8.104       Low
cufflinks 9.637        
cufflinks 16.066        
cufflinks 17.122       High
cufflinks 9.36        

0 Strain