Gene : Potri.005G123000 P. trichocarpa v3.0
Defline:  (1 of 2) PTHR12894//PTHR12894:SF10 - CNH DOMAIN CONTAINING // VAM6/VPS39-LIKE PROTEIN Genomic Order:  1230
Name:  ? Potri.005G123000 Secondary Identifier:  ? PAC:27029675
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.005G123000 0.5kb upstream 0.5kb upstream 8436 true Chr05: 9587404-9595839 Populus trichocarpa
Potri.005G123000 0.5kb upstream 0.5kb upstream 500 false Chr05: 9595340-9595839 Populus trichocarpa
Potri.005G123000 0.5kb downstream 0.5kb downstream 8436 true Chr05: 9586904-9595339 Populus trichocarpa
Potri.005G123000 0.5kb downstream 0.5kb downstream 500 false Chr05: 9586904-9587403 Populus trichocarpa
Potri.005G123000 1.0kb upstream 1.0kb upstream 8936 true Chr05: 9587404-9596339 Populus trichocarpa
Potri.005G123000 1.0kb upstream 1.0kb upstream 1000 false Chr05: 9595340-9596339 Populus trichocarpa
Potri.005G123000 1.0kb downstream 1.0kb downstream 8936 true Chr05: 9586404-9595339 Populus trichocarpa
Potri.005G123000 1.0kb downstream 1.0kb downstream 1000 false Chr05: 9586404-9587403 Populus trichocarpa
Potri.005G123000 2.0kb upstream 2.0kb upstream 9936 true Chr05: 9587404-9597339 Populus trichocarpa
Potri.005G123000 2.0kb upstream 2.0kb upstream 2000 false Chr05: 9595340-9597339 Populus trichocarpa
Potri.005G123000 2.0kb downstream 2.0kb downstream 9936 true Chr05: 9585404-9595339 Populus trichocarpa
Potri.005G123000 2.0kb downstream 2.0kb downstream 2000 false Chr05: 9585404-9587403 Populus trichocarpa
Potri.005G123000 5.0kb upstream 5.0kb upstream 12936 true Chr05: 9587404-9600339 Populus trichocarpa
Potri.005G123000 5.0kb upstream 5.0kb upstream 5000 false Chr05: 9595340-9600339 Populus trichocarpa
Potri.005G123000 5.0kb downstream 5.0kb downstream 12936 true Chr05: 9582404-9595339 Populus trichocarpa
Potri.005G123000 5.0kb downstream 5.0kb downstream 5000 false Chr05: 9582404-9587403 Populus trichocarpa
Potri.005G123000 10.0kb upstream 10.0kb upstream 17936 true Chr05: 9587404-9605339 Populus trichocarpa
Potri.005G123000 10.0kb upstream 10.0kb upstream 10000 false Chr05: 9595340-9605339 Populus trichocarpa
Potri.005G123000 10.0kb downstream 10.0kb downstream 17936 true Chr05: 9577404-9595339 Populus trichocarpa
Potri.005G123000 10.0kb downstream 10.0kb downstream 10000 false Chr05: 9577404-9587403 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.113        
cufflinks 2.531       Low
cufflinks 2.671        
cufflinks 2.285       Low
cufflinks 5.542       High
cufflinks 3.211        
cufflinks 5.262       High
cufflinks 4.484        
cufflinks 2.122       Low
cufflinks 2.804        
cufflinks 4.514        
cufflinks 2.639        
cufflinks 3.677        
cufflinks 3.547        
cufflinks 4.569        
cufflinks 1.916       Low
cufflinks 4.511        
cufflinks 2.781        
cufflinks 5.126       High
cufflinks 3.149        
cufflinks 4.252        
cufflinks 3.059        
cufflinks 3.524        
cufflinks 4.465        
cufflinks 3.122        
cufflinks 12.966        
cufflinks 15.747        
cufflinks 15.834       High
cufflinks 15.406        
cufflinks 12.835        

0 Strain