Gene : Potri.005G123900 P. trichocarpa v3.0
Defline:  (1 of 2) K00234 - succinate dehydrogenase (ubiquinone) flavoprotein subunit (SDHA, SDH1) Genomic Order:  1239
Name:  ? Potri.005G123900 Secondary Identifier:  ? PAC:27031488
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PWY-4302 Populus trichocarpa pathologic  
Ptrichocarpa PWY-3781 Populus trichocarpa pathologic  
Ptrichocarpa PWY-561 Populus trichocarpa pathologic  
Ptrichocarpa PWY-5464 Populus trichocarpa pathologic  
Ptrichocarpa PWY-5690 Populus trichocarpa pathologic  
Ptrichocarpa PWY-7279 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.005G123900 0.5kb upstream 0.5kb upstream 7333 true Chr05: 9657095-9664427 Populus trichocarpa
Potri.005G123900 0.5kb upstream 0.5kb upstream 500 false Chr05: 9663928-9664427 Populus trichocarpa
Potri.005G123900 0.5kb downstream 0.5kb downstream 7333 true Chr05: 9656595-9663927 Populus trichocarpa
Potri.005G123900 0.5kb downstream 0.5kb downstream 500 false Chr05: 9656595-9657094 Populus trichocarpa
Potri.005G123900 1.0kb upstream 1.0kb upstream 7833 true Chr05: 9657095-9664927 Populus trichocarpa
Potri.005G123900 1.0kb upstream 1.0kb upstream 1000 false Chr05: 9663928-9664927 Populus trichocarpa
Potri.005G123900 1.0kb downstream 1.0kb downstream 7833 true Chr05: 9656095-9663927 Populus trichocarpa
Potri.005G123900 1.0kb downstream 1.0kb downstream 1000 false Chr05: 9656095-9657094 Populus trichocarpa
Potri.005G123900 2.0kb upstream 2.0kb upstream 8833 true Chr05: 9657095-9665927 Populus trichocarpa
Potri.005G123900 2.0kb upstream 2.0kb upstream 2000 false Chr05: 9663928-9665927 Populus trichocarpa
Potri.005G123900 2.0kb downstream 2.0kb downstream 8833 true Chr05: 9655095-9663927 Populus trichocarpa
Potri.005G123900 2.0kb downstream 2.0kb downstream 2000 false Chr05: 9655095-9657094 Populus trichocarpa
Potri.005G123900 5.0kb upstream 5.0kb upstream 11833 true Chr05: 9657095-9668927 Populus trichocarpa
Potri.005G123900 5.0kb upstream 5.0kb upstream 5000 false Chr05: 9663928-9668927 Populus trichocarpa
Potri.005G123900 5.0kb downstream 5.0kb downstream 11833 true Chr05: 9652095-9663927 Populus trichocarpa
Potri.005G123900 5.0kb downstream 5.0kb downstream 5000 false Chr05: 9652095-9657094 Populus trichocarpa
Potri.005G123900 10.0kb upstream 10.0kb upstream 16833 true Chr05: 9657095-9673927 Populus trichocarpa
Potri.005G123900 10.0kb upstream 10.0kb upstream 10000 false Chr05: 9663928-9673927 Populus trichocarpa
Potri.005G123900 10.0kb downstream 10.0kb downstream 16833 true Chr05: 9647095-9663927 Populus trichocarpa
Potri.005G123900 10.0kb downstream 10.0kb downstream 10000 false Chr05: 9647095-9657094 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.011        
cufflinks 3.024       High
cufflinks 2.029        
cufflinks 2.759        
cufflinks 2.137        
cufflinks 2.442        
cufflinks 2.257        
cufflinks 2.218        
cufflinks 1.454       Low
cufflinks 3.037       High
cufflinks 1.723       Low
cufflinks 2.709        
cufflinks 2.351        
cufflinks 2.736        
cufflinks 2.291        
cufflinks 1.944        
cufflinks 1.833       Low
cufflinks 3.075       High
cufflinks 2.356        
cufflinks 2.353        
cufflinks 2.195        
cufflinks 2.447        
cufflinks 2.58        
cufflinks 2.339        
cufflinks 9.078        
cufflinks 13.409       High
cufflinks 12.666        
cufflinks 12.964       High
cufflinks 11.067        
cufflinks 10.097        

0 Strain