Gene : Potri.014G195700 P. trichocarpa v3.0
Defline:  (1 of 2) K01900 - succinyl-CoA synthetase beta subunit (LSC2) Genomic Order:  1957
Name:  ? Potri.014G195700 Secondary Identifier:  ? PAC:27032488
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PWY-5464 Populus trichocarpa pathologic  
Ptrichocarpa PWY-5690 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.014G195700 0.5kb upstream 0.5kb upstream 5644 true Chr14: 18488053-18493696 Populus trichocarpa
Potri.014G195700 0.5kb upstream 0.5kb upstream 500 false Chr14: 18488053-18488552 Populus trichocarpa
Potri.014G195700 0.5kb downstream 0.5kb downstream 5644 true Chr14: 18488553-18494196 Populus trichocarpa
Potri.014G195700 0.5kb downstream 0.5kb downstream 500 false Chr14: 18493697-18494196 Populus trichocarpa
Potri.014G195700 1.0kb upstream 1.0kb upstream 6144 true Chr14: 18487553-18493696 Populus trichocarpa
Potri.014G195700 1.0kb upstream 1.0kb upstream 1000 false Chr14: 18487553-18488552 Populus trichocarpa
Potri.014G195700 1.0kb downstream 1.0kb downstream 6144 true Chr14: 18488553-18494696 Populus trichocarpa
Potri.014G195700 1.0kb downstream 1.0kb downstream 1000 false Chr14: 18493697-18494696 Populus trichocarpa
Potri.014G195700 2.0kb upstream 2.0kb upstream 7144 true Chr14: 18486553-18493696 Populus trichocarpa
Potri.014G195700 2.0kb upstream 2.0kb upstream 2000 false Chr14: 18486553-18488552 Populus trichocarpa
Potri.014G195700 2.0kb downstream 2.0kb downstream 7144 true Chr14: 18488553-18495696 Populus trichocarpa
Potri.014G195700 2.0kb downstream 2.0kb downstream 2000 false Chr14: 18493697-18495696 Populus trichocarpa
Potri.014G195700 5.0kb upstream 5.0kb upstream 10144 true Chr14: 18483553-18493696 Populus trichocarpa
Potri.014G195700 5.0kb upstream 5.0kb upstream 5000 false Chr14: 18483553-18488552 Populus trichocarpa
Potri.014G195700 5.0kb downstream 5.0kb downstream 10144 true Chr14: 18488553-18498696 Populus trichocarpa
Potri.014G195700 5.0kb downstream 5.0kb downstream 5000 false Chr14: 18493697-18498696 Populus trichocarpa
Potri.014G195700 10.0kb upstream 10.0kb upstream 15144 true Chr14: 18478553-18493696 Populus trichocarpa
Potri.014G195700 10.0kb upstream 10.0kb upstream 10000 false Chr14: 18478553-18488552 Populus trichocarpa
Potri.014G195700 10.0kb downstream 10.0kb downstream 15144 true Chr14: 18488553-18503696 Populus trichocarpa
Potri.014G195700 10.0kb downstream 10.0kb downstream 10000 false Chr14: 18493697-18503696 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.702        
cufflinks 4.961       Low
cufflinks 7.482        
cufflinks 4.864       Low
cufflinks 6.448        
cufflinks 7.362        
cufflinks 5.36       Low
cufflinks 9.815     High High
cufflinks 6.928        
cufflinks 8.465        
cufflinks 10.768     High High
cufflinks 6.229        
cufflinks 4.946       Low
cufflinks 5.236       Low
cufflinks 7.623        
cufflinks 6.644        
cufflinks 6.031        
cufflinks 7.273        
cufflinks 4.972       Low
cufflinks 7.865        
cufflinks 9.162     High High
cufflinks 7.015        
cufflinks 6.575        
cufflinks 9.079     High High
cufflinks 33.453     High  
cufflinks 28.763     High  
cufflinks 33.989     High  
cufflinks 31.035     High  
cufflinks 42.498     High High
cufflinks 29.96     High  

0 Strain