Gene : Potri.006G125700 P. trichocarpa v3.0
Defline:  (1 of 1) PTHR30603//PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC Genomic Order:  1257
Name:  ? Potri.006G125700 Secondary Identifier:  ? PAC:27005113
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Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.006G125700 0.5kb upstream 0.5kb upstream 5068 true Chr06: 10143054-10148121 Populus trichocarpa
Potri.006G125700 0.5kb upstream 0.5kb upstream 500 false Chr06: 10147622-10148121 Populus trichocarpa
Potri.006G125700 0.5kb downstream 0.5kb downstream 5068 true Chr06: 10142554-10147621 Populus trichocarpa
Potri.006G125700 0.5kb downstream 0.5kb downstream 500 false Chr06: 10142554-10143053 Populus trichocarpa
Potri.006G125700 1.0kb upstream 1.0kb upstream 5568 true Chr06: 10143054-10148621 Populus trichocarpa
Potri.006G125700 1.0kb upstream 1.0kb upstream 1000 false Chr06: 10147622-10148621 Populus trichocarpa
Potri.006G125700 1.0kb downstream 1.0kb downstream 5568 true Chr06: 10142054-10147621 Populus trichocarpa
Potri.006G125700 1.0kb downstream 1.0kb downstream 1000 false Chr06: 10142054-10143053 Populus trichocarpa
Potri.006G125700 2.0kb upstream 2.0kb upstream 6568 true Chr06: 10143054-10149621 Populus trichocarpa
Potri.006G125700 2.0kb upstream 2.0kb upstream 2000 false Chr06: 10147622-10149621 Populus trichocarpa
Potri.006G125700 2.0kb downstream 2.0kb downstream 6568 true Chr06: 10141054-10147621 Populus trichocarpa
Potri.006G125700 2.0kb downstream 2.0kb downstream 2000 false Chr06: 10141054-10143053 Populus trichocarpa
Potri.006G125700 5.0kb upstream 5.0kb upstream 9568 true Chr06: 10143054-10152621 Populus trichocarpa
Potri.006G125700 5.0kb upstream 5.0kb upstream 5000 false Chr06: 10147622-10152621 Populus trichocarpa
Potri.006G125700 5.0kb downstream 5.0kb downstream 9568 true Chr06: 10138054-10147621 Populus trichocarpa
Potri.006G125700 5.0kb downstream 5.0kb downstream 5000 false Chr06: 10138054-10143053 Populus trichocarpa
Potri.006G125700 10.0kb upstream 10.0kb upstream 14568 true Chr06: 10143054-10157621 Populus trichocarpa
Potri.006G125700 10.0kb upstream 10.0kb upstream 10000 false Chr06: 10147622-10157621 Populus trichocarpa
Potri.006G125700 10.0kb downstream 10.0kb downstream 14568 true Chr06: 10133054-10147621 Populus trichocarpa
Potri.006G125700 10.0kb downstream 10.0kb downstream 10000 false Chr06: 10133054-10143053 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.856        
cufflinks 2.337        
cufflinks 0.224       Low
cufflinks 4.081       High
cufflinks 0.233       Low
cufflinks 1.158        
cufflinks 1.504        
cufflinks 1.129        
cufflinks 2.333        
cufflinks 0.751        
cufflinks 1.272        
cufflinks 1.237        
cufflinks 0.285       Low
cufflinks 0.326       Low
cufflinks 2.38       High
cufflinks 2.22        
cufflinks 2.41       High
cufflinks 0.504        
cufflinks 0.384       Low
cufflinks 1.33        
cufflinks 1.827        
cufflinks 0.482        
cufflinks 0.643        
cufflinks 2.027        
cufflinks 1.329        
cufflinks 29.13     High High
cufflinks 26.176     High  
cufflinks 28.441       High
cufflinks 20.691        
cufflinks 25.641        

0 Strain