Gene : Potri.006G027300 P. trichocarpa v3.0
Defline:  (1 of 2) 1.14.13.81 - Magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase / Mg-protoporphyrin IX monomethyl ester oxidative cyclase Genomic Order:  273
Name:  ? Potri.006G027300 Secondary Identifier:  ? PAC:27005540
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa CHLOROPHYLL-SYN Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.006G027300 0.5kb upstream 0.5kb upstream 3196 true Chr06: 1834844-1838039 Populus trichocarpa
Potri.006G027300 0.5kb upstream 0.5kb upstream 500 false Chr06: 1837540-1838039 Populus trichocarpa
Potri.006G027300 0.5kb downstream 0.5kb downstream 3196 true Chr06: 1834344-1837539 Populus trichocarpa
Potri.006G027300 0.5kb downstream 0.5kb downstream 500 false Chr06: 1834344-1834843 Populus trichocarpa
Potri.006G027300 1.0kb upstream 1.0kb upstream 3696 true Chr06: 1834844-1838539 Populus trichocarpa
Potri.006G027300 1.0kb upstream 1.0kb upstream 1000 false Chr06: 1837540-1838539 Populus trichocarpa
Potri.006G027300 1.0kb downstream 1.0kb downstream 3696 true Chr06: 1833844-1837539 Populus trichocarpa
Potri.006G027300 1.0kb downstream 1.0kb downstream 1000 false Chr06: 1833844-1834843 Populus trichocarpa
Potri.006G027300 2.0kb upstream 2.0kb upstream 4696 true Chr06: 1834844-1839539 Populus trichocarpa
Potri.006G027300 2.0kb upstream 2.0kb upstream 2000 false Chr06: 1837540-1839539 Populus trichocarpa
Potri.006G027300 2.0kb downstream 2.0kb downstream 4696 true Chr06: 1832844-1837539 Populus trichocarpa
Potri.006G027300 2.0kb downstream 2.0kb downstream 2000 false Chr06: 1832844-1834843 Populus trichocarpa
Potri.006G027300 5.0kb upstream 5.0kb upstream 7696 true Chr06: 1834844-1842539 Populus trichocarpa
Potri.006G027300 5.0kb upstream 5.0kb upstream 5000 false Chr06: 1837540-1842539 Populus trichocarpa
Potri.006G027300 5.0kb downstream 5.0kb downstream 7696 true Chr06: 1829844-1837539 Populus trichocarpa
Potri.006G027300 5.0kb downstream 5.0kb downstream 5000 false Chr06: 1829844-1834843 Populus trichocarpa
Potri.006G027300 10.0kb upstream 10.0kb upstream 12696 true Chr06: 1834844-1847539 Populus trichocarpa
Potri.006G027300 10.0kb upstream 10.0kb upstream 10000 false Chr06: 1837540-1847539 Populus trichocarpa
Potri.006G027300 10.0kb downstream 10.0kb downstream 12696 true Chr06: 1824844-1837539 Populus trichocarpa
Potri.006G027300 10.0kb downstream 10.0kb downstream 10000 false Chr06: 1824844-1834843 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.403       Low
cufflinks 0.796       Low
cufflinks 68.286     High High
cufflinks 56.962     High High
cufflinks 9.325     High  
cufflinks 0.671       Low
cufflinks 5.331        
cufflinks 5.892        
cufflinks 0.672       Low
cufflinks 57.992     High High
cufflinks 7.748        
cufflinks 12.172     High  
cufflinks 5.622        
cufflinks 22.835     High  
cufflinks 9.036     High  
cufflinks 3.36        
cufflinks 45.151     High High
cufflinks 36.108     High High
cufflinks 21.446     High  
cufflinks 3.093        
cufflinks 11.386     High  
cufflinks 33.09     High  
cufflinks 3.89        
cufflinks 10.505     High  
cufflinks 67.19     High  
cufflinks 188.408     High High
cufflinks 252.627     High High
cufflinks 109.543     High  
cufflinks 88.916     High  
cufflinks 108.56     High  

0 Strain