Gene : Potri.007G096100 P. trichocarpa v3.0
Defline:  (1 of 2) K15334 - multisite-specific tRNA:(cytosine-C5)-methyltransferase [EC:2.1.1.202] (NCL1, TRM4) Genomic Order:  961
Name:  ? Potri.007G096100 Secondary Identifier:  ? PAC:27016424
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PWY-6829 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.007G096100 0.5kb upstream 0.5kb upstream 8910 true Chr07: 12216601-12225510 Populus trichocarpa
Potri.007G096100 0.5kb upstream 0.5kb upstream 500 false Chr07: 12225011-12225510 Populus trichocarpa
Potri.007G096100 0.5kb downstream 0.5kb downstream 8910 true Chr07: 12216101-12225010 Populus trichocarpa
Potri.007G096100 0.5kb downstream 0.5kb downstream 500 false Chr07: 12216101-12216600 Populus trichocarpa
Potri.007G096100 1.0kb upstream 1.0kb upstream 9410 true Chr07: 12216601-12226010 Populus trichocarpa
Potri.007G096100 1.0kb upstream 1.0kb upstream 1000 false Chr07: 12225011-12226010 Populus trichocarpa
Potri.007G096100 1.0kb downstream 1.0kb downstream 9410 true Chr07: 12215601-12225010 Populus trichocarpa
Potri.007G096100 1.0kb downstream 1.0kb downstream 1000 false Chr07: 12215601-12216600 Populus trichocarpa
Potri.007G096100 2.0kb upstream 2.0kb upstream 10410 true Chr07: 12216601-12227010 Populus trichocarpa
Potri.007G096100 2.0kb upstream 2.0kb upstream 2000 false Chr07: 12225011-12227010 Populus trichocarpa
Potri.007G096100 2.0kb downstream 2.0kb downstream 10410 true Chr07: 12214601-12225010 Populus trichocarpa
Potri.007G096100 2.0kb downstream 2.0kb downstream 2000 false Chr07: 12214601-12216600 Populus trichocarpa
Potri.007G096100 5.0kb upstream 5.0kb upstream 13410 true Chr07: 12216601-12230010 Populus trichocarpa
Potri.007G096100 5.0kb upstream 5.0kb upstream 5000 false Chr07: 12225011-12230010 Populus trichocarpa
Potri.007G096100 5.0kb downstream 5.0kb downstream 13410 true Chr07: 12211601-12225010 Populus trichocarpa
Potri.007G096100 5.0kb downstream 5.0kb downstream 5000 false Chr07: 12211601-12216600 Populus trichocarpa
Potri.007G096100 10.0kb upstream 10.0kb upstream 18410 true Chr07: 12216601-12235010 Populus trichocarpa
Potri.007G096100 10.0kb upstream 10.0kb upstream 10000 false Chr07: 12225011-12235010 Populus trichocarpa
Potri.007G096100 10.0kb downstream 10.0kb downstream 18410 true Chr07: 12206601-12225010 Populus trichocarpa
Potri.007G096100 10.0kb downstream 10.0kb downstream 10000 false Chr07: 12206601-12216600 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.257       Low
cufflinks 2.505        
cufflinks 2.274        
cufflinks 1.309       Low
cufflinks 1.903        
cufflinks 1.934        
cufflinks 2.269        
cufflinks 1.152       Low
cufflinks 1.501        
cufflinks 1.736        
cufflinks 2.768        
cufflinks 1.911        
cufflinks 2.245        
cufflinks 2.438        
cufflinks 1.406       Low
cufflinks 2.427        
cufflinks 5.723       High
cufflinks 2.043        
cufflinks 2.375        
cufflinks 2.077        
cufflinks 1.85        
cufflinks 1.714        
cufflinks 2.466        
cufflinks 2.46        
cufflinks 30.12     High  
cufflinks 28.696     High  
cufflinks 27.936     High  
cufflinks 32.547     High  
cufflinks 31.827     High  
cufflinks 27.719     High  

0 Strain