Gene : Potri.007G142300 P. trichocarpa v3.0
Defline:  (1 of 1) PTHR30239:SF3 - ACETOLACTATE SYNTHASE SMALL SUBUNIT 2, CHLOROPLASTIC Genomic Order:  1423
Name:  ? Potri.007G142300 Secondary Identifier:  ? PAC:27015078
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa BRANCHED-CHAIN-AA-SYN-PWY Populus trichocarpa pathologic  
Ptrichocarpa VALSYN-PWY Populus trichocarpa pathologic  
Ptrichocarpa ILEUSYN-PWY Populus trichocarpa pathologic  
Ptrichocarpa PWY-3001 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.007G142300 0.5kb upstream 0.5kb upstream 5637 true Chr07: 15230354-15235990 Populus trichocarpa
Potri.007G142300 0.5kb upstream 0.5kb upstream 500 false Chr07: 15230354-15230853 Populus trichocarpa
Potri.007G142300 0.5kb downstream 0.5kb downstream 5637 true Chr07: 15230854-15236490 Populus trichocarpa
Potri.007G142300 0.5kb downstream 0.5kb downstream 500 false Chr07: 15235991-15236490 Populus trichocarpa
Potri.007G142300 1.0kb upstream 1.0kb upstream 6137 true Chr07: 15229854-15235990 Populus trichocarpa
Potri.007G142300 1.0kb upstream 1.0kb upstream 1000 false Chr07: 15229854-15230853 Populus trichocarpa
Potri.007G142300 1.0kb downstream 1.0kb downstream 6137 true Chr07: 15230854-15236990 Populus trichocarpa
Potri.007G142300 1.0kb downstream 1.0kb downstream 1000 false Chr07: 15235991-15236990 Populus trichocarpa
Potri.007G142300 2.0kb upstream 2.0kb upstream 7137 true Chr07: 15228854-15235990 Populus trichocarpa
Potri.007G142300 2.0kb upstream 2.0kb upstream 2000 false Chr07: 15228854-15230853 Populus trichocarpa
Potri.007G142300 2.0kb downstream 2.0kb downstream 7137 true Chr07: 15230854-15237990 Populus trichocarpa
Potri.007G142300 2.0kb downstream 2.0kb downstream 2000 false Chr07: 15235991-15237990 Populus trichocarpa
Potri.007G142300 5.0kb upstream 5.0kb upstream 10137 true Chr07: 15225854-15235990 Populus trichocarpa
Potri.007G142300 5.0kb upstream 5.0kb upstream 5000 false Chr07: 15225854-15230853 Populus trichocarpa
Potri.007G142300 5.0kb downstream 5.0kb downstream 10137 true Chr07: 15230854-15240990 Populus trichocarpa
Potri.007G142300 5.0kb downstream 5.0kb downstream 5000 false Chr07: 15235991-15240990 Populus trichocarpa
Potri.007G142300 10.0kb upstream 10.0kb upstream 15137 true Chr07: 15220854-15235990 Populus trichocarpa
Potri.007G142300 10.0kb upstream 10.0kb upstream 10000 false Chr07: 15220854-15230853 Populus trichocarpa
Potri.007G142300 10.0kb downstream 10.0kb downstream 15137 true Chr07: 15230854-15245990 Populus trichocarpa
Potri.007G142300 10.0kb downstream 10.0kb downstream 10000 false Chr07: 15235991-15245990 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.897        
cufflinks 2.619        
cufflinks 3.342        
cufflinks 8.245       High
cufflinks 2.917        
cufflinks 3.285        
cufflinks 1.905       Low
cufflinks 2.254        
cufflinks 2.977        
cufflinks 3.619        
cufflinks 3.842        
cufflinks 3.067        
cufflinks 3.939        
cufflinks 2.228       Low
cufflinks 2.263        
cufflinks 2.725        
cufflinks 3.282        
cufflinks 1.759       Low
cufflinks 3.319        
cufflinks 3.588        
cufflinks 2.574        
cufflinks 3.667        
cufflinks 3.741        
cufflinks 2.605        
cufflinks 53.283     High  
cufflinks 48.118     High  
cufflinks 43.166     High  
cufflinks 38.708     High  
cufflinks 37.659     High  
cufflinks 51.404     High  

0 Strain