Gene : Potri.007G004100 P. trichocarpa v3.0
Defline:  (1 of 3) K01873 - valyl-tRNA synthetase (VARS, valS) Genomic Order:  41
Name:  ? Potri.007G004100 Secondary Identifier:  ? PAC:27015569
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa TRNA-CHARGING-PWY Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.007G004100 0.5kb upstream 0.5kb upstream 7937 true Chr07: 301138-309074 Populus trichocarpa
Potri.007G004100 0.5kb upstream 0.5kb upstream 500 false Chr07: 301138-301637 Populus trichocarpa
Potri.007G004100 0.5kb downstream 0.5kb downstream 7937 true Chr07: 301638-309574 Populus trichocarpa
Potri.007G004100 0.5kb downstream 0.5kb downstream 500 false Chr07: 309075-309574 Populus trichocarpa
Potri.007G004100 1.0kb upstream 1.0kb upstream 8437 true Chr07: 300638-309074 Populus trichocarpa
Potri.007G004100 1.0kb upstream 1.0kb upstream 1000 false Chr07: 300638-301637 Populus trichocarpa
Potri.007G004100 1.0kb downstream 1.0kb downstream 8437 true Chr07: 301638-310074 Populus trichocarpa
Potri.007G004100 1.0kb downstream 1.0kb downstream 1000 false Chr07: 309075-310074 Populus trichocarpa
Potri.007G004100 2.0kb upstream 2.0kb upstream 9437 true Chr07: 299638-309074 Populus trichocarpa
Potri.007G004100 2.0kb upstream 2.0kb upstream 2000 false Chr07: 299638-301637 Populus trichocarpa
Potri.007G004100 2.0kb downstream 2.0kb downstream 9437 true Chr07: 301638-311074 Populus trichocarpa
Potri.007G004100 2.0kb downstream 2.0kb downstream 2000 false Chr07: 309075-311074 Populus trichocarpa
Potri.007G004100 5.0kb upstream 5.0kb upstream 12437 true Chr07: 296638-309074 Populus trichocarpa
Potri.007G004100 5.0kb upstream 5.0kb upstream 5000 false Chr07: 296638-301637 Populus trichocarpa
Potri.007G004100 5.0kb downstream 5.0kb downstream 12437 true Chr07: 301638-314074 Populus trichocarpa
Potri.007G004100 5.0kb downstream 5.0kb downstream 5000 false Chr07: 309075-314074 Populus trichocarpa
Potri.007G004100 10.0kb upstream 10.0kb upstream 17437 true Chr07: 291638-309074 Populus trichocarpa
Potri.007G004100 10.0kb upstream 10.0kb upstream 10000 false Chr07: 291638-301637 Populus trichocarpa
Potri.007G004100 10.0kb downstream 10.0kb downstream 17437 true Chr07: 301638-319074 Populus trichocarpa
Potri.007G004100 10.0kb downstream 10.0kb downstream 10000 false Chr07: 309075-319074 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.462       Low
cufflinks 7.373        
cufflinks 4.033       Low
cufflinks 12.016     High High
cufflinks 4.8        
cufflinks 6.627        
cufflinks 4.505       Low
cufflinks 6.694        
cufflinks 5.218        
cufflinks 8.056        
cufflinks 7.651        
cufflinks 6.419        
cufflinks 7.654        
cufflinks 3.95       Low
cufflinks 9.072       High
cufflinks 5.899        
cufflinks 4.987        
cufflinks 8.135        
cufflinks 6.081        
cufflinks 8.191        
cufflinks 3.85       Low
cufflinks 9.27     High High
cufflinks 7.123        
cufflinks 8.398        
cufflinks 41.903     High Low
cufflinks 63.095     High  
cufflinks 61.689     High  
cufflinks 58.264     High  
cufflinks 59.987     High  
cufflinks 51.139     High  

0 Strain