Gene : Potri.008G172500 P. trichocarpa v3.0
Defline:  (1 of 2) K01703 - 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit (leuC) Genomic Order:  1725
Name:  ? Potri.008G172500 Secondary Identifier:  ? PAC:27039372
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa BRANCHED-CHAIN-AA-SYN-PWY Populus trichocarpa pathologic  
Ptrichocarpa LEUSYN-PWY Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.008G172500 0.5kb upstream 0.5kb upstream 12137 true Chr08: 11766955-11779091 Populus trichocarpa
Potri.008G172500 0.5kb upstream 0.5kb upstream 500 false Chr08: 11778592-11779091 Populus trichocarpa
Potri.008G172500 0.5kb downstream 0.5kb downstream 12137 true Chr08: 11766455-11778591 Populus trichocarpa
Potri.008G172500 0.5kb downstream 0.5kb downstream 500 false Chr08: 11766455-11766954 Populus trichocarpa
Potri.008G172500 1.0kb upstream 1.0kb upstream 12637 true Chr08: 11766955-11779591 Populus trichocarpa
Potri.008G172500 1.0kb upstream 1.0kb upstream 1000 false Chr08: 11778592-11779591 Populus trichocarpa
Potri.008G172500 1.0kb downstream 1.0kb downstream 12637 true Chr08: 11765955-11778591 Populus trichocarpa
Potri.008G172500 1.0kb downstream 1.0kb downstream 1000 false Chr08: 11765955-11766954 Populus trichocarpa
Potri.008G172500 2.0kb upstream 2.0kb upstream 13637 true Chr08: 11766955-11780591 Populus trichocarpa
Potri.008G172500 2.0kb upstream 2.0kb upstream 2000 false Chr08: 11778592-11780591 Populus trichocarpa
Potri.008G172500 2.0kb downstream 2.0kb downstream 13637 true Chr08: 11764955-11778591 Populus trichocarpa
Potri.008G172500 2.0kb downstream 2.0kb downstream 2000 false Chr08: 11764955-11766954 Populus trichocarpa
Potri.008G172500 5.0kb upstream 5.0kb upstream 16637 true Chr08: 11766955-11783591 Populus trichocarpa
Potri.008G172500 5.0kb upstream 5.0kb upstream 5000 false Chr08: 11778592-11783591 Populus trichocarpa
Potri.008G172500 5.0kb downstream 5.0kb downstream 16637 true Chr08: 11761955-11778591 Populus trichocarpa
Potri.008G172500 5.0kb downstream 5.0kb downstream 5000 false Chr08: 11761955-11766954 Populus trichocarpa
Potri.008G172500 10.0kb upstream 10.0kb upstream 21637 true Chr08: 11766955-11788591 Populus trichocarpa
Potri.008G172500 10.0kb upstream 10.0kb upstream 10000 false Chr08: 11778592-11788591 Populus trichocarpa
Potri.008G172500 10.0kb downstream 10.0kb downstream 21637 true Chr08: 11756955-11778591 Populus trichocarpa
Potri.008G172500 10.0kb downstream 10.0kb downstream 10000 false Chr08: 11756955-11766954 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.103     Low  
cufflinks 0.159        
cufflinks 0.155        
cufflinks 0.176        
cufflinks 1.034       High
cufflinks 0.1     Low  
cufflinks 0.084     Low  
cufflinks 0.054     Low  
cufflinks 0.091     Low  
cufflinks 0.038     Low Low
cufflinks 0.111        
cufflinks 0.149     Low  
cufflinks 0.364       High
cufflinks 0.045     Low Low
cufflinks 0.032     Low Low
cufflinks 0.07     Low  
cufflinks 0.074     Low  
cufflinks 0.183        
cufflinks 0.081     Low  
cufflinks 0.084     Low  
cufflinks 0.113     Low  
cufflinks 0.065     Low  
cufflinks 0.081     Low  
cufflinks 0.088     Low  
cufflinks 56.318     High  
cufflinks 40.034     High  
cufflinks 59.722     High  
cufflinks 26.001        
cufflinks 63.389     High  
cufflinks 44.114     High  

0 Strain