Gene : Potri.008G172700 P. trichocarpa v3.0
Defline:  (1 of 1) K02434 - aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B (gatB, PET112) Genomic Order:  1727
Name:  ? Potri.008G172700 Secondary Identifier:  ? PAC:27035933
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PWY-5921 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.008G172700 0.5kb upstream 0.5kb upstream 6211 true Chr08: 11782886-11789096 Populus trichocarpa
Potri.008G172700 0.5kb upstream 0.5kb upstream 500 false Chr08: 11782886-11783385 Populus trichocarpa
Potri.008G172700 0.5kb downstream 0.5kb downstream 6211 true Chr08: 11783386-11789596 Populus trichocarpa
Potri.008G172700 0.5kb downstream 0.5kb downstream 500 false Chr08: 11789097-11789596 Populus trichocarpa
Potri.008G172700 1.0kb upstream 1.0kb upstream 6711 true Chr08: 11782386-11789096 Populus trichocarpa
Potri.008G172700 1.0kb upstream 1.0kb upstream 1000 false Chr08: 11782386-11783385 Populus trichocarpa
Potri.008G172700 1.0kb downstream 1.0kb downstream 6711 true Chr08: 11783386-11790096 Populus trichocarpa
Potri.008G172700 1.0kb downstream 1.0kb downstream 1000 false Chr08: 11789097-11790096 Populus trichocarpa
Potri.008G172700 2.0kb upstream 2.0kb upstream 7711 true Chr08: 11781386-11789096 Populus trichocarpa
Potri.008G172700 2.0kb upstream 2.0kb upstream 2000 false Chr08: 11781386-11783385 Populus trichocarpa
Potri.008G172700 2.0kb downstream 2.0kb downstream 7711 true Chr08: 11783386-11791096 Populus trichocarpa
Potri.008G172700 2.0kb downstream 2.0kb downstream 2000 false Chr08: 11789097-11791096 Populus trichocarpa
Potri.008G172700 5.0kb upstream 5.0kb upstream 10711 true Chr08: 11778386-11789096 Populus trichocarpa
Potri.008G172700 5.0kb upstream 5.0kb upstream 5000 false Chr08: 11778386-11783385 Populus trichocarpa
Potri.008G172700 5.0kb downstream 5.0kb downstream 10711 true Chr08: 11783386-11794096 Populus trichocarpa
Potri.008G172700 5.0kb downstream 5.0kb downstream 5000 false Chr08: 11789097-11794096 Populus trichocarpa
Potri.008G172700 10.0kb upstream 10.0kb upstream 15711 true Chr08: 11773386-11789096 Populus trichocarpa
Potri.008G172700 10.0kb upstream 10.0kb upstream 10000 false Chr08: 11773386-11783385 Populus trichocarpa
Potri.008G172700 10.0kb downstream 10.0kb downstream 15711 true Chr08: 11783386-11799096 Populus trichocarpa
Potri.008G172700 10.0kb downstream 10.0kb downstream 10000 false Chr08: 11789097-11799096 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.283        
cufflinks 1.237        
cufflinks 6.541       High
cufflinks 2.967        
cufflinks 4.102       High
cufflinks 2.072        
cufflinks 2.014        
cufflinks 2.342        
cufflinks 1.235        
cufflinks 2.773        
cufflinks 1.065       Low
cufflinks 2.575        
cufflinks 2.331        
cufflinks 2.508        
cufflinks 1.281        
cufflinks 2.567        
cufflinks 2.17        
cufflinks 1.006       Low
cufflinks 3.291        
cufflinks 0.822       Low
cufflinks 1.055       Low
cufflinks 1.487        
cufflinks 2.783        
cufflinks 2.835        
cufflinks 29.387     High  
cufflinks 29.841     High  
cufflinks 28.763     High  
cufflinks 30.142     High  
cufflinks 24.278        
cufflinks 27.468     High  

0 Strain