Gene : Potri.008G078800 P. trichocarpa v3.0
Defline:  (1 of 3) K01653 - acetolactate synthase I/III small subunit (E2.2.1.6S, ilvH, ilvN) Genomic Order:  788
Name:  ? Potri.008G078800 Secondary Identifier:  ? PAC:27039575
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa BRANCHED-CHAIN-AA-SYN-PWY Populus trichocarpa pathologic  
Ptrichocarpa VALSYN-PWY Populus trichocarpa pathologic  
Ptrichocarpa ILEUSYN-PWY Populus trichocarpa pathologic  
Ptrichocarpa PWY-3001 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.008G078800 0.5kb upstream 0.5kb upstream 8056 true Chr08: 4899542-4907597 Populus trichocarpa
Potri.008G078800 0.5kb upstream 0.5kb upstream 500 false Chr08: 4899542-4900041 Populus trichocarpa
Potri.008G078800 0.5kb downstream 0.5kb downstream 8056 true Chr08: 4900042-4908097 Populus trichocarpa
Potri.008G078800 0.5kb downstream 0.5kb downstream 500 false Chr08: 4907598-4908097 Populus trichocarpa
Potri.008G078800 1.0kb upstream 1.0kb upstream 8556 true Chr08: 4899042-4907597 Populus trichocarpa
Potri.008G078800 1.0kb upstream 1.0kb upstream 1000 false Chr08: 4899042-4900041 Populus trichocarpa
Potri.008G078800 1.0kb downstream 1.0kb downstream 8556 true Chr08: 4900042-4908597 Populus trichocarpa
Potri.008G078800 1.0kb downstream 1.0kb downstream 1000 false Chr08: 4907598-4908597 Populus trichocarpa
Potri.008G078800 2.0kb upstream 2.0kb upstream 9556 true Chr08: 4898042-4907597 Populus trichocarpa
Potri.008G078800 2.0kb upstream 2.0kb upstream 2000 false Chr08: 4898042-4900041 Populus trichocarpa
Potri.008G078800 2.0kb downstream 2.0kb downstream 9556 true Chr08: 4900042-4909597 Populus trichocarpa
Potri.008G078800 2.0kb downstream 2.0kb downstream 2000 false Chr08: 4907598-4909597 Populus trichocarpa
Potri.008G078800 5.0kb upstream 5.0kb upstream 12556 true Chr08: 4895042-4907597 Populus trichocarpa
Potri.008G078800 5.0kb upstream 5.0kb upstream 5000 false Chr08: 4895042-4900041 Populus trichocarpa
Potri.008G078800 5.0kb downstream 5.0kb downstream 12556 true Chr08: 4900042-4912597 Populus trichocarpa
Potri.008G078800 5.0kb downstream 5.0kb downstream 5000 false Chr08: 4907598-4912597 Populus trichocarpa
Potri.008G078800 10.0kb upstream 10.0kb upstream 17556 true Chr08: 4890042-4907597 Populus trichocarpa
Potri.008G078800 10.0kb upstream 10.0kb upstream 10000 false Chr08: 4890042-4900041 Populus trichocarpa
Potri.008G078800 10.0kb downstream 10.0kb downstream 17556 true Chr08: 4900042-4917597 Populus trichocarpa
Potri.008G078800 10.0kb downstream 10.0kb downstream 10000 false Chr08: 4907598-4917597 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.274       Low
cufflinks 14.579     High High
cufflinks 2.004       Low
cufflinks 6.643        
cufflinks 10.084     High  
cufflinks 3.017        
cufflinks 11.194     High High
cufflinks 10.622     High  
cufflinks 6.812        
cufflinks 3.808        
cufflinks 13.29     High High
cufflinks 5.348        
cufflinks 3.676        
cufflinks 5.824        
cufflinks 7.105        
cufflinks 9.322        
cufflinks 10.698     High High
cufflinks 9.58        
cufflinks 1.149       Low
cufflinks 4.043        
cufflinks 4.981        
cufflinks 5.863        
cufflinks 3.862        
cufflinks 5.079        
cufflinks 31.382     High  
cufflinks 15.708       Low
cufflinks 12.423       Low
cufflinks 25.762        
cufflinks 26.153        
cufflinks 22.612        

0 Strain