Gene : Potri.009G163200 P. trichocarpa v3.0
Defline:  (1 of 1) PTHR10003//PTHR10003:SF34//PTHR36083//PTHR36083:SF1 - SUPEROXIDE DISMUTASE CU-ZN -RELATED // SUPEROXIDE DISMUTASE [CU-ZN] 2, CHLOROPLASTIC // FAMILY NOT NAMED // 50S RIBOSOMAL PROTEIN L32, CHLOROPLASTIC Genomic Order:  1632
Name:  ? Potri.009G163200 Secondary Identifier:  ? PAC:26985897
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa DETOX1-PWY Populus trichocarpa pathologic  
Ptrichocarpa PWY-6854 Populus trichocarpa pathologic  
Ptrichocarpa DETOX1-PWY-1 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.009G163200 0.5kb upstream 0.5kb upstream 2908 true Chr09: 12500620-12503527 Populus trichocarpa
Potri.009G163200 0.5kb upstream 0.5kb upstream 500 false Chr09: 12503028-12503527 Populus trichocarpa
Potri.009G163200 0.5kb downstream 0.5kb downstream 2908 true Chr09: 12500120-12503027 Populus trichocarpa
Potri.009G163200 0.5kb downstream 0.5kb downstream 500 false Chr09: 12500120-12500619 Populus trichocarpa
Potri.009G163200 1.0kb upstream 1.0kb upstream 3408 true Chr09: 12500620-12504027 Populus trichocarpa
Potri.009G163200 1.0kb upstream 1.0kb upstream 1000 false Chr09: 12503028-12504027 Populus trichocarpa
Potri.009G163200 1.0kb downstream 1.0kb downstream 3408 true Chr09: 12499620-12503027 Populus trichocarpa
Potri.009G163200 1.0kb downstream 1.0kb downstream 1000 false Chr09: 12499620-12500619 Populus trichocarpa
Potri.009G163200 2.0kb upstream 2.0kb upstream 4408 true Chr09: 12500620-12505027 Populus trichocarpa
Potri.009G163200 2.0kb upstream 2.0kb upstream 2000 false Chr09: 12503028-12505027 Populus trichocarpa
Potri.009G163200 2.0kb downstream 2.0kb downstream 4408 true Chr09: 12498620-12503027 Populus trichocarpa
Potri.009G163200 2.0kb downstream 2.0kb downstream 2000 false Chr09: 12498620-12500619 Populus trichocarpa
Potri.009G163200 5.0kb upstream 5.0kb upstream 7408 true Chr09: 12500620-12508027 Populus trichocarpa
Potri.009G163200 5.0kb upstream 5.0kb upstream 5000 false Chr09: 12503028-12508027 Populus trichocarpa
Potri.009G163200 5.0kb downstream 5.0kb downstream 7408 true Chr09: 12495620-12503027 Populus trichocarpa
Potri.009G163200 5.0kb downstream 5.0kb downstream 5000 false Chr09: 12495620-12500619 Populus trichocarpa
Potri.009G163200 10.0kb upstream 10.0kb upstream 12408 true Chr09: 12500620-12513027 Populus trichocarpa
Potri.009G163200 10.0kb upstream 10.0kb upstream 10000 false Chr09: 12503028-12513027 Populus trichocarpa
Potri.009G163200 10.0kb downstream 10.0kb downstream 12408 true Chr09: 12490620-12503027 Populus trichocarpa
Potri.009G163200 10.0kb downstream 10.0kb downstream 10000 false Chr09: 12490620-12500619 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.286        
cufflinks 32.715     High High
cufflinks 1.17       Low
cufflinks 65.741     High High
cufflinks 1.437       Low
cufflinks 1.735       Low
cufflinks 3.858        
cufflinks 1.364       Low
cufflinks 34.095     High High
cufflinks 6.509        
cufflinks 5.025        
cufflinks 3.694        
cufflinks 28.21     High  
cufflinks 30.263     High High
cufflinks 11.721     High  
cufflinks 3.664        
cufflinks 22.461     High  
cufflinks 3.389        
cufflinks 4.955        
cufflinks 15.581     High  
cufflinks 32.124     High High
cufflinks 7.012        
cufflinks 19.643     High  
cufflinks 23.424     High  
cufflinks 13.487     High  
cufflinks 24.227        
cufflinks 19.059        
cufflinks 22.695        
cufflinks 21.881        
cufflinks 23.064        

0 Strain