Gene : Potri.010G221600 P. trichocarpa v3.0
Defline:  (1 of 2) 4.2.3.5 - Chorismate synthase / 5-enolpyruvylshikimate-3-phosphate phospholyase Genomic Order:  2216
Name:  ? Potri.010G221600 Secondary Identifier:  ? PAC:26982706
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa ARO-PWY Populus trichocarpa pathologic  
Ptrichocarpa PWY-6163 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

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Expression

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Cufflinks Score Displayer

 

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4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.010G221600 0.5kb upstream 0.5kb upstream 4809 true Chr10: 20646982-20651790 Populus trichocarpa
Potri.010G221600 0.5kb upstream 0.5kb upstream 500 false Chr10: 20646982-20647481 Populus trichocarpa
Potri.010G221600 0.5kb downstream 0.5kb downstream 4809 true Chr10: 20647482-20652290 Populus trichocarpa
Potri.010G221600 0.5kb downstream 0.5kb downstream 500 false Chr10: 20651791-20652290 Populus trichocarpa
Potri.010G221600 1.0kb upstream 1.0kb upstream 5309 true Chr10: 20646482-20651790 Populus trichocarpa
Potri.010G221600 1.0kb upstream 1.0kb upstream 1000 false Chr10: 20646482-20647481 Populus trichocarpa
Potri.010G221600 1.0kb downstream 1.0kb downstream 5309 true Chr10: 20647482-20652790 Populus trichocarpa
Potri.010G221600 1.0kb downstream 1.0kb downstream 1000 false Chr10: 20651791-20652790 Populus trichocarpa
Potri.010G221600 2.0kb upstream 2.0kb upstream 6309 true Chr10: 20645482-20651790 Populus trichocarpa
Potri.010G221600 2.0kb upstream 2.0kb upstream 2000 false Chr10: 20645482-20647481 Populus trichocarpa
Potri.010G221600 2.0kb downstream 2.0kb downstream 6309 true Chr10: 20647482-20653790 Populus trichocarpa
Potri.010G221600 2.0kb downstream 2.0kb downstream 2000 false Chr10: 20651791-20653790 Populus trichocarpa
Potri.010G221600 5.0kb upstream 5.0kb upstream 9309 true Chr10: 20642482-20651790 Populus trichocarpa
Potri.010G221600 5.0kb upstream 5.0kb upstream 5000 false Chr10: 20642482-20647481 Populus trichocarpa
Potri.010G221600 5.0kb downstream 5.0kb downstream 9309 true Chr10: 20647482-20656790 Populus trichocarpa
Potri.010G221600 5.0kb downstream 5.0kb downstream 5000 false Chr10: 20651791-20656790 Populus trichocarpa
Potri.010G221600 10.0kb upstream 10.0kb upstream 14309 true Chr10: 20637482-20651790 Populus trichocarpa
Potri.010G221600 10.0kb upstream 10.0kb upstream 10000 false Chr10: 20637482-20647481 Populus trichocarpa
Potri.010G221600 10.0kb downstream 10.0kb downstream 14309 true Chr10: 20647482-20661790 Populus trichocarpa
Potri.010G221600 10.0kb downstream 10.0kb downstream 10000 false Chr10: 20651791-20661790 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.405        
cufflinks 8.506        
cufflinks 7.561        
cufflinks 3.945       Low
cufflinks 5.654        
cufflinks 6.038        
cufflinks 4.604        
cufflinks 8.054        
cufflinks 6.387        
cufflinks 7.376        
cufflinks 11.181     High High
cufflinks 4.511        
cufflinks 9.022        
cufflinks 4.479        
cufflinks 13.318     High High
cufflinks 2.032       Low
cufflinks 5.262        
cufflinks 5.14        
cufflinks 2.992       Low
cufflinks 4.171        
cufflinks 8.656        
cufflinks 8.094     High  
cufflinks 6.152        
cufflinks 7.505        
cufflinks 22.403        
cufflinks 13.374        
cufflinks 16.52        
cufflinks 15.769        
cufflinks 24.683        
cufflinks 16.185        

0 Strain