Gene : Potri.011G023900 P. trichocarpa v3.0
Defline:  (1 of 1) 1.3.3.3 - Coproporphyrinogen oxidase / Coproporphyrinogenase Genomic Order:  239
Name:  ? Potri.011G023900 Secondary Identifier:  ? PAC:27003187
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa CHLOROPHYLL-SYN Populus trichocarpa pathologic  
Ptrichocarpa PWY-5918 Populus trichocarpa pathologic  
Ptrichocarpa HEME-BIOSYNTHESIS-II Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.011G023900 0.5kb upstream 0.5kb upstream 4333 true Chr11: 1976086-1980418 Populus trichocarpa
Potri.011G023900 0.5kb upstream 0.5kb upstream 500 false Chr11: 1979919-1980418 Populus trichocarpa
Potri.011G023900 0.5kb downstream 0.5kb downstream 4333 true Chr11: 1975586-1979918 Populus trichocarpa
Potri.011G023900 0.5kb downstream 0.5kb downstream 500 false Chr11: 1975586-1976085 Populus trichocarpa
Potri.011G023900 1.0kb upstream 1.0kb upstream 4833 true Chr11: 1976086-1980918 Populus trichocarpa
Potri.011G023900 1.0kb upstream 1.0kb upstream 1000 false Chr11: 1979919-1980918 Populus trichocarpa
Potri.011G023900 1.0kb downstream 1.0kb downstream 4833 true Chr11: 1975086-1979918 Populus trichocarpa
Potri.011G023900 1.0kb downstream 1.0kb downstream 1000 false Chr11: 1975086-1976085 Populus trichocarpa
Potri.011G023900 2.0kb upstream 2.0kb upstream 5833 true Chr11: 1976086-1981918 Populus trichocarpa
Potri.011G023900 2.0kb upstream 2.0kb upstream 2000 false Chr11: 1979919-1981918 Populus trichocarpa
Potri.011G023900 2.0kb downstream 2.0kb downstream 5833 true Chr11: 1974086-1979918 Populus trichocarpa
Potri.011G023900 2.0kb downstream 2.0kb downstream 2000 false Chr11: 1974086-1976085 Populus trichocarpa
Potri.011G023900 5.0kb upstream 5.0kb upstream 8833 true Chr11: 1976086-1984918 Populus trichocarpa
Potri.011G023900 5.0kb upstream 5.0kb upstream 5000 false Chr11: 1979919-1984918 Populus trichocarpa
Potri.011G023900 5.0kb downstream 5.0kb downstream 8833 true Chr11: 1971086-1979918 Populus trichocarpa
Potri.011G023900 5.0kb downstream 5.0kb downstream 5000 false Chr11: 1971086-1976085 Populus trichocarpa
Potri.011G023900 10.0kb upstream 10.0kb upstream 13833 true Chr11: 1976086-1989918 Populus trichocarpa
Potri.011G023900 10.0kb upstream 10.0kb upstream 10000 false Chr11: 1979919-1989918 Populus trichocarpa
Potri.011G023900 10.0kb downstream 10.0kb downstream 13833 true Chr11: 1966086-1979918 Populus trichocarpa
Potri.011G023900 10.0kb downstream 10.0kb downstream 10000 false Chr11: 1966086-1976085 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.015     High Low
cufflinks 43.119     High High
cufflinks 26.77     High  
cufflinks 24.447     High  
cufflinks 27.216     High  
cufflinks 13.757     High Low
cufflinks 28.565     High  
cufflinks 15.733     High  
cufflinks 25.831     High  
cufflinks 31.635     High  
cufflinks 34.455     High  
cufflinks 11.084     High Low
cufflinks 76.291     High High
cufflinks 19.27     High  
cufflinks 39.704     High  
cufflinks 48.411     High High
cufflinks 15.545     High Low
cufflinks 30.642     High  
cufflinks 19.853     High  
cufflinks 41.008     High  
cufflinks 13.905     High Low
cufflinks 43.087     High High
cufflinks 16.535     High  
cufflinks 27.421     High  
cufflinks 41.45     High  
cufflinks 44.224     High  
cufflinks 43.305     High  
cufflinks 47.86     High  
cufflinks 43.037     High  
cufflinks 36.133     High Low

0 Strain