Gene : Potri.011G113200 P. trichocarpa v3.0
Defline:  (1 of 1) PF13963 - Transposase-associated domain (Transpos_assoc) Genomic Order:  1132
Name:  ? Potri.011G113200 Secondary Identifier:  ? PAC:27002007
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PWY-6842 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.011G113200 0.5kb upstream 0.5kb upstream 2200 true Chr11: 13845508-13847707 Populus trichocarpa
Potri.011G113200 0.5kb upstream 0.5kb upstream 500 false Chr11: 13847208-13847707 Populus trichocarpa
Potri.011G113200 0.5kb downstream 0.5kb downstream 2200 true Chr11: 13845008-13847207 Populus trichocarpa
Potri.011G113200 0.5kb downstream 0.5kb downstream 500 false Chr11: 13845008-13845507 Populus trichocarpa
Potri.011G113200 1.0kb upstream 1.0kb upstream 2700 true Chr11: 13845508-13848207 Populus trichocarpa
Potri.011G113200 1.0kb upstream 1.0kb upstream 1000 false Chr11: 13847208-13848207 Populus trichocarpa
Potri.011G113200 1.0kb downstream 1.0kb downstream 2700 true Chr11: 13844508-13847207 Populus trichocarpa
Potri.011G113200 1.0kb downstream 1.0kb downstream 1000 false Chr11: 13844508-13845507 Populus trichocarpa
Potri.011G113200 2.0kb upstream 2.0kb upstream 3700 true Chr11: 13845508-13849207 Populus trichocarpa
Potri.011G113200 2.0kb upstream 2.0kb upstream 2000 false Chr11: 13847208-13849207 Populus trichocarpa
Potri.011G113200 2.0kb downstream 2.0kb downstream 3700 true Chr11: 13843508-13847207 Populus trichocarpa
Potri.011G113200 2.0kb downstream 2.0kb downstream 2000 false Chr11: 13843508-13845507 Populus trichocarpa
Potri.011G113200 5.0kb upstream 5.0kb upstream 6700 true Chr11: 13845508-13852207 Populus trichocarpa
Potri.011G113200 5.0kb upstream 5.0kb upstream 5000 false Chr11: 13847208-13852207 Populus trichocarpa
Potri.011G113200 5.0kb downstream 5.0kb downstream 6700 true Chr11: 13840508-13847207 Populus trichocarpa
Potri.011G113200 5.0kb downstream 5.0kb downstream 5000 false Chr11: 13840508-13845507 Populus trichocarpa
Potri.011G113200 10.0kb upstream 10.0kb upstream 11700 true Chr11: 13845508-13857207 Populus trichocarpa
Potri.011G113200 10.0kb upstream 10.0kb upstream 10000 false Chr11: 13847208-13857207 Populus trichocarpa
Potri.011G113200 10.0kb downstream 10.0kb downstream 11700 true Chr11: 13835508-13847207 Populus trichocarpa
Potri.011G113200 10.0kb downstream 10.0kb downstream 10000 false Chr11: 13835508-13845507 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.932       High
cufflinks 0.34        
cufflinks 2.554       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.223        
cufflinks 0.087     Low  
cufflinks 0.179        
cufflinks 0.056     Low  
cufflinks 0.075     Low  
cufflinks 0.067     Low  
cufflinks 0.047     Low  
cufflinks 0.017     Low Low
cufflinks 0.021     Low Low
cufflinks 0.285        
cufflinks 1.516       High
cufflinks 2.162       High
cufflinks 0.974       High
cufflinks 0.528        
cufflinks 0.306        
cufflinks 0.224        
cufflinks 0.088     Low  
cufflinks 0.015     Low Low
cufflinks 0.114     Low  
cufflinks 0.06     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.325        

0 Strain