Gene : Potri.014G090500 P. trichocarpa v3.0
Defline:  (1 of 1) K00606 - 3-methyl-2-oxobutanoate hydroxymethyltransferase (panB) Genomic Order:  905
Name:  ? Potri.014G090500 Secondary Identifier:  ? PAC:27032172
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PANTO-PWY Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.014G090500 0.5kb upstream 0.5kb upstream 4359 true Chr14: 7105190-7109548 Populus trichocarpa
Potri.014G090500 0.5kb upstream 0.5kb upstream 500 false Chr14: 7109049-7109548 Populus trichocarpa
Potri.014G090500 0.5kb downstream 0.5kb downstream 4359 true Chr14: 7104690-7109048 Populus trichocarpa
Potri.014G090500 0.5kb downstream 0.5kb downstream 500 false Chr14: 7104690-7105189 Populus trichocarpa
Potri.014G090500 1.0kb upstream 1.0kb upstream 4859 true Chr14: 7105190-7110048 Populus trichocarpa
Potri.014G090500 1.0kb upstream 1.0kb upstream 1000 false Chr14: 7109049-7110048 Populus trichocarpa
Potri.014G090500 1.0kb downstream 1.0kb downstream 4859 true Chr14: 7104190-7109048 Populus trichocarpa
Potri.014G090500 1.0kb downstream 1.0kb downstream 1000 false Chr14: 7104190-7105189 Populus trichocarpa
Potri.014G090500 2.0kb upstream 2.0kb upstream 5859 true Chr14: 7105190-7111048 Populus trichocarpa
Potri.014G090500 2.0kb upstream 2.0kb upstream 2000 false Chr14: 7109049-7111048 Populus trichocarpa
Potri.014G090500 2.0kb downstream 2.0kb downstream 5859 true Chr14: 7103190-7109048 Populus trichocarpa
Potri.014G090500 2.0kb downstream 2.0kb downstream 2000 false Chr14: 7103190-7105189 Populus trichocarpa
Potri.014G090500 5.0kb upstream 5.0kb upstream 8859 true Chr14: 7105190-7114048 Populus trichocarpa
Potri.014G090500 5.0kb upstream 5.0kb upstream 5000 false Chr14: 7109049-7114048 Populus trichocarpa
Potri.014G090500 5.0kb downstream 5.0kb downstream 8859 true Chr14: 7100190-7109048 Populus trichocarpa
Potri.014G090500 5.0kb downstream 5.0kb downstream 5000 false Chr14: 7100190-7105189 Populus trichocarpa
Potri.014G090500 10.0kb upstream 10.0kb upstream 13859 true Chr14: 7105190-7119048 Populus trichocarpa
Potri.014G090500 10.0kb upstream 10.0kb upstream 10000 false Chr14: 7109049-7119048 Populus trichocarpa
Potri.014G090500 10.0kb downstream 10.0kb downstream 13859 true Chr14: 7095190-7109048 Populus trichocarpa
Potri.014G090500 10.0kb downstream 10.0kb downstream 10000 false Chr14: 7095190-7105189 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.882        
cufflinks 1.74        
cufflinks 2.248        
cufflinks 1.736        
cufflinks 2.145        
cufflinks 0.746       Low
cufflinks 3.08        
cufflinks 3.659       High
cufflinks 2.342        
cufflinks 1.754        
cufflinks 0.984       Low
cufflinks 2.513        
cufflinks 2.309        
cufflinks 3.212       High
cufflinks 3.269       High
cufflinks 2.36        
cufflinks 2.817        
cufflinks 1.489        
cufflinks 3.241       High
cufflinks 2.103        
cufflinks 2.715        
cufflinks 1.442       Low
cufflinks 2.043        
cufflinks 3.506       High
cufflinks 4.745        
cufflinks 1.613        
cufflinks 2.64        
cufflinks 3.561        
cufflinks 5.978       High
cufflinks 1.403       Low

0 Strain