Gene : Potri.014G111600 P. trichocarpa v3.0
Defline:  (1 of 3) K00231 - oxygen-dependent protoporphyrinogen oxidase (PPOX, hemY) Genomic Order:  1116
Name:  ? Potri.014G111600 Secondary Identifier:  ? PAC:27035351
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa CHLOROPHYLL-SYN Populus trichocarpa pathologic  
Ptrichocarpa PWY-5918 Populus trichocarpa pathologic  
Ptrichocarpa HEME-BIOSYNTHESIS-II Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.014G111600 0.5kb upstream 0.5kb upstream 5624 true Chr14: 8730117-8735740 Populus trichocarpa
Potri.014G111600 0.5kb upstream 0.5kb upstream 500 false Chr14: 8730117-8730616 Populus trichocarpa
Potri.014G111600 0.5kb downstream 0.5kb downstream 5624 true Chr14: 8730617-8736240 Populus trichocarpa
Potri.014G111600 0.5kb downstream 0.5kb downstream 500 false Chr14: 8735741-8736240 Populus trichocarpa
Potri.014G111600 1.0kb upstream 1.0kb upstream 6124 true Chr14: 8729617-8735740 Populus trichocarpa
Potri.014G111600 1.0kb upstream 1.0kb upstream 1000 false Chr14: 8729617-8730616 Populus trichocarpa
Potri.014G111600 1.0kb downstream 1.0kb downstream 6124 true Chr14: 8730617-8736740 Populus trichocarpa
Potri.014G111600 1.0kb downstream 1.0kb downstream 1000 false Chr14: 8735741-8736740 Populus trichocarpa
Potri.014G111600 2.0kb upstream 2.0kb upstream 7124 true Chr14: 8728617-8735740 Populus trichocarpa
Potri.014G111600 2.0kb upstream 2.0kb upstream 2000 false Chr14: 8728617-8730616 Populus trichocarpa
Potri.014G111600 2.0kb downstream 2.0kb downstream 7124 true Chr14: 8730617-8737740 Populus trichocarpa
Potri.014G111600 2.0kb downstream 2.0kb downstream 2000 false Chr14: 8735741-8737740 Populus trichocarpa
Potri.014G111600 5.0kb upstream 5.0kb upstream 10124 true Chr14: 8725617-8735740 Populus trichocarpa
Potri.014G111600 5.0kb upstream 5.0kb upstream 5000 false Chr14: 8725617-8730616 Populus trichocarpa
Potri.014G111600 5.0kb downstream 5.0kb downstream 10124 true Chr14: 8730617-8740740 Populus trichocarpa
Potri.014G111600 5.0kb downstream 5.0kb downstream 5000 false Chr14: 8735741-8740740 Populus trichocarpa
Potri.014G111600 10.0kb upstream 10.0kb upstream 15124 true Chr14: 8720617-8735740 Populus trichocarpa
Potri.014G111600 10.0kb upstream 10.0kb upstream 10000 false Chr14: 8720617-8730616 Populus trichocarpa
Potri.014G111600 10.0kb downstream 10.0kb downstream 15124 true Chr14: 8730617-8745740 Populus trichocarpa
Potri.014G111600 10.0kb downstream 10.0kb downstream 10000 false Chr14: 8735741-8745740 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.309       Low
cufflinks 1.821       High
cufflinks 2.535       High
cufflinks 1.848       High
cufflinks 0.288       Low
cufflinks 0.98        
cufflinks 0.554        
cufflinks 0.246       Low
cufflinks 0.39       Low
cufflinks 0.618        
cufflinks 1.578       High
cufflinks 0.767        
cufflinks 0.7        
cufflinks 0.573        
cufflinks 0.42        
cufflinks 0.442        
cufflinks 1.469        
cufflinks 1.575       High
cufflinks 0.636        
cufflinks 1.561       High
cufflinks 0.768        
cufflinks 1.128        
cufflinks 1.368        
cufflinks 0.868        
cufflinks 1.407        
cufflinks 2.561        
cufflinks 4.844       High
cufflinks 2.924        
cufflinks 3.909        
cufflinks 1.521        

0 Strain