Gene : Potri.016G040200 P. trichocarpa v3.0
Defline:  (1 of 3) K06443 - lycopene beta-cyclase (lcyB, crtL1, crtY) Genomic Order:  402
Name:  ? Potri.016G040200 Secondary Identifier:  ? PAC:27013870
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa CAROTENOID-PWY Populus trichocarpa pathologic  
Ptrichocarpa PWY-5943 Populus trichocarpa pathologic  
Ptrichocarpa PWY-5947 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.016G040200 0.5kb upstream 0.5kb upstream 6601 true Chr16: 2460698-2467298 Populus trichocarpa
Potri.016G040200 0.5kb upstream 0.5kb upstream 500 false Chr16: 2466799-2467298 Populus trichocarpa
Potri.016G040200 0.5kb downstream 0.5kb downstream 6601 true Chr16: 2460198-2466798 Populus trichocarpa
Potri.016G040200 0.5kb downstream 0.5kb downstream 500 false Chr16: 2460198-2460697 Populus trichocarpa
Potri.016G040200 1.0kb upstream 1.0kb upstream 7101 true Chr16: 2460698-2467798 Populus trichocarpa
Potri.016G040200 1.0kb upstream 1.0kb upstream 1000 false Chr16: 2466799-2467798 Populus trichocarpa
Potri.016G040200 1.0kb downstream 1.0kb downstream 7101 true Chr16: 2459698-2466798 Populus trichocarpa
Potri.016G040200 1.0kb downstream 1.0kb downstream 1000 false Chr16: 2459698-2460697 Populus trichocarpa
Potri.016G040200 2.0kb upstream 2.0kb upstream 8101 true Chr16: 2460698-2468798 Populus trichocarpa
Potri.016G040200 2.0kb upstream 2.0kb upstream 2000 false Chr16: 2466799-2468798 Populus trichocarpa
Potri.016G040200 2.0kb downstream 2.0kb downstream 8101 true Chr16: 2458698-2466798 Populus trichocarpa
Potri.016G040200 2.0kb downstream 2.0kb downstream 2000 false Chr16: 2458698-2460697 Populus trichocarpa
Potri.016G040200 5.0kb upstream 5.0kb upstream 11101 true Chr16: 2460698-2471798 Populus trichocarpa
Potri.016G040200 5.0kb upstream 5.0kb upstream 5000 false Chr16: 2466799-2471798 Populus trichocarpa
Potri.016G040200 5.0kb downstream 5.0kb downstream 11101 true Chr16: 2455698-2466798 Populus trichocarpa
Potri.016G040200 5.0kb downstream 5.0kb downstream 5000 false Chr16: 2455698-2460697 Populus trichocarpa
Potri.016G040200 10.0kb upstream 10.0kb upstream 16101 true Chr16: 2460698-2476798 Populus trichocarpa
Potri.016G040200 10.0kb upstream 10.0kb upstream 10000 false Chr16: 2466799-2476798 Populus trichocarpa
Potri.016G040200 10.0kb downstream 10.0kb downstream 16101 true Chr16: 2450698-2466798 Populus trichocarpa
Potri.016G040200 10.0kb downstream 10.0kb downstream 10000 false Chr16: 2450698-2460697 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.579        
cufflinks 0.349       Low
cufflinks 0.688        
cufflinks 3.807       High
cufflinks 1.083        
cufflinks 1.209        
cufflinks 1.356        
cufflinks 2.428       High
cufflinks 0.187       Low
cufflinks 3.324       High
cufflinks 0.494       Low
cufflinks 4.278       High
cufflinks 3.376       High
cufflinks 1.523        
cufflinks 1.141        
cufflinks 0.69        
cufflinks 1.079        
cufflinks 0.459       Low
cufflinks 1.866        
cufflinks 0.477       Low
cufflinks 0.944        
cufflinks 0.993        
cufflinks 1.608        
cufflinks 1.087        
cufflinks 6.782       Low
cufflinks 25.062       High
cufflinks 29.085     High High
cufflinks 16.866        
cufflinks 15.838        
cufflinks 16.782        

0 Strain