Gene : Potri.016G120900 P. trichocarpa v3.0
Defline:  (1 of 2) K01778 - diaminopimelate epimerase (dapF) Genomic Order:  1209
Name:  ? Potri.016G120900 Secondary Identifier:  ? PAC:27012636
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PWY-724 Populus trichocarpa pathologic  
Ptrichocarpa PWY-5097 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.016G120900 0.5kb upstream 0.5kb upstream 6018 true Chr16: 12568133-12574150 Populus trichocarpa
Potri.016G120900 0.5kb upstream 0.5kb upstream 500 false Chr16: 12568133-12568632 Populus trichocarpa
Potri.016G120900 0.5kb downstream 0.5kb downstream 6018 true Chr16: 12568633-12574650 Populus trichocarpa
Potri.016G120900 0.5kb downstream 0.5kb downstream 500 false Chr16: 12574151-12574650 Populus trichocarpa
Potri.016G120900 1.0kb upstream 1.0kb upstream 6518 true Chr16: 12567633-12574150 Populus trichocarpa
Potri.016G120900 1.0kb upstream 1.0kb upstream 1000 false Chr16: 12567633-12568632 Populus trichocarpa
Potri.016G120900 1.0kb downstream 1.0kb downstream 6518 true Chr16: 12568633-12575150 Populus trichocarpa
Potri.016G120900 1.0kb downstream 1.0kb downstream 1000 false Chr16: 12574151-12575150 Populus trichocarpa
Potri.016G120900 2.0kb upstream 2.0kb upstream 7518 true Chr16: 12566633-12574150 Populus trichocarpa
Potri.016G120900 2.0kb upstream 2.0kb upstream 2000 false Chr16: 12566633-12568632 Populus trichocarpa
Potri.016G120900 2.0kb downstream 2.0kb downstream 7518 true Chr16: 12568633-12576150 Populus trichocarpa
Potri.016G120900 2.0kb downstream 2.0kb downstream 2000 false Chr16: 12574151-12576150 Populus trichocarpa
Potri.016G120900 5.0kb upstream 5.0kb upstream 10518 true Chr16: 12563633-12574150 Populus trichocarpa
Potri.016G120900 5.0kb upstream 5.0kb upstream 5000 false Chr16: 12563633-12568632 Populus trichocarpa
Potri.016G120900 5.0kb downstream 5.0kb downstream 10518 true Chr16: 12568633-12579150 Populus trichocarpa
Potri.016G120900 5.0kb downstream 5.0kb downstream 5000 false Chr16: 12574151-12579150 Populus trichocarpa
Potri.016G120900 10.0kb upstream 10.0kb upstream 15518 true Chr16: 12558633-12574150 Populus trichocarpa
Potri.016G120900 10.0kb upstream 10.0kb upstream 10000 false Chr16: 12558633-12568632 Populus trichocarpa
Potri.016G120900 10.0kb downstream 10.0kb downstream 15518 true Chr16: 12568633-12584150 Populus trichocarpa
Potri.016G120900 10.0kb downstream 10.0kb downstream 10000 false Chr16: 12574151-12584150 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.992       Low
cufflinks 2.052       Low
cufflinks 3.389        
cufflinks 3.731        
cufflinks 4.251       High
cufflinks 4.057        
cufflinks 5.216       High
cufflinks 3.527        
cufflinks 5.07       High
cufflinks 1.255       Low
cufflinks 3.011        
cufflinks 3.228        
cufflinks 2.137       Low
cufflinks 4.576       High
cufflinks 3.116        
cufflinks 2.793        
cufflinks 2.554        
cufflinks 3.0        
cufflinks 2.997        
cufflinks 2.656        
cufflinks 3.046        
cufflinks 3.409        
cufflinks 3.091        
cufflinks 3.49        
cufflinks 14.131        
cufflinks 10.451        
cufflinks 12.249        
cufflinks 15.987        
cufflinks 22.302       High
cufflinks 10.308        

0 Strain