Gene : Potri.016G056000 P. trichocarpa v3.0
Defline:  (1 of 4) K00559 - sterol 24-C-methyltransferase (E2.1.1.41, SMT1, ERG6) Genomic Order:  560
Name:  ? Potri.016G056000 Secondary Identifier:  ? PAC:27012197
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PWY-2541 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.016G056000 0.5kb upstream 0.5kb upstream 4237 true Chr16: 3678309-3682545 Populus trichocarpa
Potri.016G056000 0.5kb upstream 0.5kb upstream 500 false Chr16: 3682046-3682545 Populus trichocarpa
Potri.016G056000 0.5kb downstream 0.5kb downstream 4237 true Chr16: 3677809-3682045 Populus trichocarpa
Potri.016G056000 0.5kb downstream 0.5kb downstream 500 false Chr16: 3677809-3678308 Populus trichocarpa
Potri.016G056000 1.0kb upstream 1.0kb upstream 4737 true Chr16: 3678309-3683045 Populus trichocarpa
Potri.016G056000 1.0kb upstream 1.0kb upstream 1000 false Chr16: 3682046-3683045 Populus trichocarpa
Potri.016G056000 1.0kb downstream 1.0kb downstream 4737 true Chr16: 3677309-3682045 Populus trichocarpa
Potri.016G056000 1.0kb downstream 1.0kb downstream 1000 false Chr16: 3677309-3678308 Populus trichocarpa
Potri.016G056000 2.0kb upstream 2.0kb upstream 5737 true Chr16: 3678309-3684045 Populus trichocarpa
Potri.016G056000 2.0kb upstream 2.0kb upstream 2000 false Chr16: 3682046-3684045 Populus trichocarpa
Potri.016G056000 2.0kb downstream 2.0kb downstream 5737 true Chr16: 3676309-3682045 Populus trichocarpa
Potri.016G056000 2.0kb downstream 2.0kb downstream 2000 false Chr16: 3676309-3678308 Populus trichocarpa
Potri.016G056000 5.0kb upstream 5.0kb upstream 8737 true Chr16: 3678309-3687045 Populus trichocarpa
Potri.016G056000 5.0kb upstream 5.0kb upstream 5000 false Chr16: 3682046-3687045 Populus trichocarpa
Potri.016G056000 5.0kb downstream 5.0kb downstream 8737 true Chr16: 3673309-3682045 Populus trichocarpa
Potri.016G056000 5.0kb downstream 5.0kb downstream 5000 false Chr16: 3673309-3678308 Populus trichocarpa
Potri.016G056000 10.0kb upstream 10.0kb upstream 13737 true Chr16: 3678309-3692045 Populus trichocarpa
Potri.016G056000 10.0kb upstream 10.0kb upstream 10000 false Chr16: 3682046-3692045 Populus trichocarpa
Potri.016G056000 10.0kb downstream 10.0kb downstream 13737 true Chr16: 3668309-3682045 Populus trichocarpa
Potri.016G056000 10.0kb downstream 10.0kb downstream 10000 false Chr16: 3668309-3678308 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.316        
cufflinks 0.547        
cufflinks 0.204       Low
cufflinks 0.431        
cufflinks 0.708        
cufflinks 0.379        
cufflinks 0.795        
cufflinks 1.386       High
cufflinks 0.418        
cufflinks 0.481        
cufflinks 0.234       Low
cufflinks 0.778        
cufflinks 0.612        
cufflinks 0.314        
cufflinks 0.307        
cufflinks 0.284        
cufflinks 0.463        
cufflinks 1.196       High
cufflinks 0.16       Low
cufflinks 0.391        
cufflinks 0.202       Low
cufflinks 0.998       High
cufflinks 0.533        
cufflinks 0.801        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.097     Low  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain