Gene : Potri.017G109600 P. trichocarpa v3.0
Defline:  (1 of 1) 4.2.1.122 - Tryptophan synthase (indole-salvaging) / Tryptophan synthase beta-2 Genomic Order:  1096
Name:  ? Potri.017G109600 Secondary Identifier:  ? PAC:26983690
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa TRPSYN-PWY Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.017G109600 0.5kb upstream 0.5kb upstream 3870 true Chr17: 12545412-12549281 Populus trichocarpa
Potri.017G109600 0.5kb upstream 0.5kb upstream 500 false Chr17: 12545412-12545911 Populus trichocarpa
Potri.017G109600 0.5kb downstream 0.5kb downstream 3870 true Chr17: 12545912-12549781 Populus trichocarpa
Potri.017G109600 0.5kb downstream 0.5kb downstream 500 false Chr17: 12549282-12549781 Populus trichocarpa
Potri.017G109600 1.0kb upstream 1.0kb upstream 4370 true Chr17: 12544912-12549281 Populus trichocarpa
Potri.017G109600 1.0kb upstream 1.0kb upstream 1000 false Chr17: 12544912-12545911 Populus trichocarpa
Potri.017G109600 1.0kb downstream 1.0kb downstream 4370 true Chr17: 12545912-12550281 Populus trichocarpa
Potri.017G109600 1.0kb downstream 1.0kb downstream 1000 false Chr17: 12549282-12550281 Populus trichocarpa
Potri.017G109600 2.0kb upstream 2.0kb upstream 5370 true Chr17: 12543912-12549281 Populus trichocarpa
Potri.017G109600 2.0kb upstream 2.0kb upstream 2000 false Chr17: 12543912-12545911 Populus trichocarpa
Potri.017G109600 2.0kb downstream 2.0kb downstream 5370 true Chr17: 12545912-12551281 Populus trichocarpa
Potri.017G109600 2.0kb downstream 2.0kb downstream 2000 false Chr17: 12549282-12551281 Populus trichocarpa
Potri.017G109600 5.0kb upstream 5.0kb upstream 8370 true Chr17: 12540912-12549281 Populus trichocarpa
Potri.017G109600 5.0kb upstream 5.0kb upstream 5000 false Chr17: 12540912-12545911 Populus trichocarpa
Potri.017G109600 5.0kb downstream 5.0kb downstream 8370 true Chr17: 12545912-12554281 Populus trichocarpa
Potri.017G109600 5.0kb downstream 5.0kb downstream 5000 false Chr17: 12549282-12554281 Populus trichocarpa
Potri.017G109600 10.0kb upstream 10.0kb upstream 13370 true Chr17: 12535912-12549281 Populus trichocarpa
Potri.017G109600 10.0kb upstream 10.0kb upstream 10000 false Chr17: 12535912-12545911 Populus trichocarpa
Potri.017G109600 10.0kb downstream 10.0kb downstream 13370 true Chr17: 12545912-12559281 Populus trichocarpa
Potri.017G109600 10.0kb downstream 10.0kb downstream 10000 false Chr17: 12549282-12559281 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.992        
cufflinks 2.562       Low
cufflinks 2.278       Low
cufflinks 14.037     High High
cufflinks 2.713       Low
cufflinks 5.396        
cufflinks 6.541        
cufflinks 7.188        
cufflinks 1.977       Low
cufflinks 4.976        
cufflinks 12.47     High High
cufflinks 10.126        
cufflinks 2.189       Low
cufflinks 3.27        
cufflinks 7.87        
cufflinks 10.736     High High
cufflinks 10.548     High  
cufflinks 5.688        
cufflinks 8.309        
cufflinks 4.153        
cufflinks 5.597        
cufflinks 8.811        
cufflinks 4.655        
cufflinks 10.928     High High
cufflinks 10.824     High High
cufflinks 1.037        
cufflinks 1.276        
cufflinks 3.758       High
cufflinks 5.57       High
cufflinks 0.701        

0 Strain