Gene : Potri.017G124500 P. trichocarpa v3.0
Defline:  (1 of 3) K01873 - valyl-tRNA synthetase (VARS, valS) Genomic Order:  1245
Name:  ? Potri.017G124500 Secondary Identifier:  ? PAC:26984465
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa TRNA-CHARGING-PWY Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.017G124500 0.5kb upstream 0.5kb upstream 16337 true Chr17: 13655730-13672066 Populus trichocarpa
Potri.017G124500 0.5kb upstream 0.5kb upstream 500 false Chr17: 13671567-13672066 Populus trichocarpa
Potri.017G124500 0.5kb downstream 0.5kb downstream 16337 true Chr17: 13655230-13671566 Populus trichocarpa
Potri.017G124500 0.5kb downstream 0.5kb downstream 500 false Chr17: 13655230-13655729 Populus trichocarpa
Potri.017G124500 1.0kb upstream 1.0kb upstream 16837 true Chr17: 13655730-13672566 Populus trichocarpa
Potri.017G124500 1.0kb upstream 1.0kb upstream 1000 false Chr17: 13671567-13672566 Populus trichocarpa
Potri.017G124500 1.0kb downstream 1.0kb downstream 16837 true Chr17: 13654730-13671566 Populus trichocarpa
Potri.017G124500 1.0kb downstream 1.0kb downstream 1000 false Chr17: 13654730-13655729 Populus trichocarpa
Potri.017G124500 2.0kb upstream 2.0kb upstream 17837 true Chr17: 13655730-13673566 Populus trichocarpa
Potri.017G124500 2.0kb upstream 2.0kb upstream 2000 false Chr17: 13671567-13673566 Populus trichocarpa
Potri.017G124500 2.0kb downstream 2.0kb downstream 17837 true Chr17: 13653730-13671566 Populus trichocarpa
Potri.017G124500 2.0kb downstream 2.0kb downstream 2000 false Chr17: 13653730-13655729 Populus trichocarpa
Potri.017G124500 5.0kb upstream 5.0kb upstream 20837 true Chr17: 13655730-13676566 Populus trichocarpa
Potri.017G124500 5.0kb upstream 5.0kb upstream 5000 false Chr17: 13671567-13676566 Populus trichocarpa
Potri.017G124500 5.0kb downstream 5.0kb downstream 20837 true Chr17: 13650730-13671566 Populus trichocarpa
Potri.017G124500 5.0kb downstream 5.0kb downstream 5000 false Chr17: 13650730-13655729 Populus trichocarpa
Potri.017G124500 10.0kb upstream 10.0kb upstream 25837 true Chr17: 13655730-13681566 Populus trichocarpa
Potri.017G124500 10.0kb upstream 10.0kb upstream 10000 false Chr17: 13671567-13681566 Populus trichocarpa
Potri.017G124500 10.0kb downstream 10.0kb downstream 25837 true Chr17: 13645730-13671566 Populus trichocarpa
Potri.017G124500 10.0kb downstream 10.0kb downstream 10000 false Chr17: 13645730-13655729 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.591        
cufflinks 2.512       High
cufflinks 0.572        
cufflinks 1.389        
cufflinks 0.996        
cufflinks 1.421        
cufflinks 0.286       Low
cufflinks 0.535       Low
cufflinks 0.895        
cufflinks 0.828        
cufflinks 1.296        
cufflinks 0.813        
cufflinks 1.291        
cufflinks 0.83        
cufflinks 1.186        
cufflinks 0.507       Low
cufflinks 0.995        
cufflinks 0.938        
cufflinks 1.016        
cufflinks 2.208       High
cufflinks 0.373       Low
cufflinks 1.167        
cufflinks 0.867        
cufflinks 1.576       High
cufflinks 11.143        
cufflinks 13.691        
cufflinks 12.001        
cufflinks 17.523       High
cufflinks 13.852        
cufflinks 13.518        

0 Strain