Gene : Potri.017G088700 P. trichocarpa v3.0
Defline:  (1 of 5) 5.4.99.5 - Chorismate mutase / Hydroxyphenylpyruvate synthase Genomic Order:  887
Name:  ? Potri.017G088700 Secondary Identifier:  ? PAC:26985490
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PWY-3462 Populus trichocarpa pathologic  
Ptrichocarpa PWY-3481 Populus trichocarpa pathologic  
Ptrichocarpa PWY-3461 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.017G088700 0.5kb upstream 0.5kb upstream 5183 true Chr17: 10601269-10606451 Populus trichocarpa
Potri.017G088700 0.5kb upstream 0.5kb upstream 500 false Chr17: 10605952-10606451 Populus trichocarpa
Potri.017G088700 0.5kb downstream 0.5kb downstream 5183 true Chr17: 10600769-10605951 Populus trichocarpa
Potri.017G088700 0.5kb downstream 0.5kb downstream 500 false Chr17: 10600769-10601268 Populus trichocarpa
Potri.017G088700 1.0kb upstream 1.0kb upstream 5683 true Chr17: 10601269-10606951 Populus trichocarpa
Potri.017G088700 1.0kb upstream 1.0kb upstream 1000 false Chr17: 10605952-10606951 Populus trichocarpa
Potri.017G088700 1.0kb downstream 1.0kb downstream 5683 true Chr17: 10600269-10605951 Populus trichocarpa
Potri.017G088700 1.0kb downstream 1.0kb downstream 1000 false Chr17: 10600269-10601268 Populus trichocarpa
Potri.017G088700 2.0kb upstream 2.0kb upstream 6683 true Chr17: 10601269-10607951 Populus trichocarpa
Potri.017G088700 2.0kb upstream 2.0kb upstream 2000 false Chr17: 10605952-10607951 Populus trichocarpa
Potri.017G088700 2.0kb downstream 2.0kb downstream 6683 true Chr17: 10599269-10605951 Populus trichocarpa
Potri.017G088700 2.0kb downstream 2.0kb downstream 2000 false Chr17: 10599269-10601268 Populus trichocarpa
Potri.017G088700 5.0kb upstream 5.0kb upstream 9683 true Chr17: 10601269-10610951 Populus trichocarpa
Potri.017G088700 5.0kb upstream 5.0kb upstream 5000 false Chr17: 10605952-10610951 Populus trichocarpa
Potri.017G088700 5.0kb downstream 5.0kb downstream 9683 true Chr17: 10596269-10605951 Populus trichocarpa
Potri.017G088700 5.0kb downstream 5.0kb downstream 5000 false Chr17: 10596269-10601268 Populus trichocarpa
Potri.017G088700 10.0kb upstream 10.0kb upstream 14683 true Chr17: 10601269-10615951 Populus trichocarpa
Potri.017G088700 10.0kb upstream 10.0kb upstream 10000 false Chr17: 10605952-10615951 Populus trichocarpa
Potri.017G088700 10.0kb downstream 10.0kb downstream 14683 true Chr17: 10591269-10605951 Populus trichocarpa
Potri.017G088700 10.0kb downstream 10.0kb downstream 10000 false Chr17: 10591269-10601268 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.323        
cufflinks 6.359        
cufflinks 2.517       Low
cufflinks 6.726        
cufflinks 7.463        
cufflinks 19.027     High High
cufflinks 5.958        
cufflinks 6.853        
cufflinks 7.1        
cufflinks 14.661     High High
cufflinks 13.233     High  
cufflinks 12.324     High  
cufflinks 6.766        
cufflinks 6.114        
cufflinks 1.37       Low
cufflinks 5.602        
cufflinks 6.34        
cufflinks 2.631       Low
cufflinks 11.965     High  
cufflinks 18.593     High High
cufflinks 2.797       Low
cufflinks 10.784     High  
cufflinks 6.097        
cufflinks 11.816     High  
cufflinks 17.381     High High
cufflinks 5.107        
cufflinks 6.803        
cufflinks 6.339        
cufflinks 7.506        
cufflinks 11.125        

0 Strain