Gene : Potri.017G110600 P. trichocarpa v3.0
Defline:  (1 of 2) PTHR30603//PTHR30603:SF18 - RNA POLYMERASE SIGMA FACTOR RPO // SUBFAMILY NOT NAMED Genomic Order:  1106
Name:  ? Potri.017G110600 Secondary Identifier:  ? PAC:26985494
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.017G110600 0.5kb upstream 0.5kb upstream 6633 true Chr17: 12609985-12616617 Populus trichocarpa
Potri.017G110600 0.5kb upstream 0.5kb upstream 500 false Chr17: 12609985-12610484 Populus trichocarpa
Potri.017G110600 0.5kb downstream 0.5kb downstream 6633 true Chr17: 12610485-12617117 Populus trichocarpa
Potri.017G110600 0.5kb downstream 0.5kb downstream 500 false Chr17: 12616618-12617117 Populus trichocarpa
Potri.017G110600 1.0kb upstream 1.0kb upstream 7133 true Chr17: 12609485-12616617 Populus trichocarpa
Potri.017G110600 1.0kb upstream 1.0kb upstream 1000 false Chr17: 12609485-12610484 Populus trichocarpa
Potri.017G110600 1.0kb downstream 1.0kb downstream 7133 true Chr17: 12610485-12617617 Populus trichocarpa
Potri.017G110600 1.0kb downstream 1.0kb downstream 1000 false Chr17: 12616618-12617617 Populus trichocarpa
Potri.017G110600 2.0kb upstream 2.0kb upstream 8133 true Chr17: 12608485-12616617 Populus trichocarpa
Potri.017G110600 2.0kb upstream 2.0kb upstream 2000 false Chr17: 12608485-12610484 Populus trichocarpa
Potri.017G110600 2.0kb downstream 2.0kb downstream 8133 true Chr17: 12610485-12618617 Populus trichocarpa
Potri.017G110600 2.0kb downstream 2.0kb downstream 2000 false Chr17: 12616618-12618617 Populus trichocarpa
Potri.017G110600 5.0kb upstream 5.0kb upstream 11133 true Chr17: 12605485-12616617 Populus trichocarpa
Potri.017G110600 5.0kb upstream 5.0kb upstream 5000 false Chr17: 12605485-12610484 Populus trichocarpa
Potri.017G110600 5.0kb downstream 5.0kb downstream 11133 true Chr17: 12610485-12621617 Populus trichocarpa
Potri.017G110600 5.0kb downstream 5.0kb downstream 5000 false Chr17: 12616618-12621617 Populus trichocarpa
Potri.017G110600 10.0kb upstream 10.0kb upstream 16133 true Chr17: 12600485-12616617 Populus trichocarpa
Potri.017G110600 10.0kb upstream 10.0kb upstream 10000 false Chr17: 12600485-12610484 Populus trichocarpa
Potri.017G110600 10.0kb downstream 10.0kb downstream 16133 true Chr17: 12610485-12626617 Populus trichocarpa
Potri.017G110600 10.0kb downstream 10.0kb downstream 10000 false Chr17: 12616618-12626617 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.599        
cufflinks 11.32     High High
cufflinks 7.035       Low
cufflinks 8.51        
cufflinks 7.04       Low
cufflinks 7.741        
cufflinks 7.548        
cufflinks 6.661       Low
cufflinks 7.79        
cufflinks 8.808     High  
cufflinks 9.005        
cufflinks 7.795        
cufflinks 8.64     High  
cufflinks 10.782     High High
cufflinks 7.984        
cufflinks 10.986     High High
cufflinks 7.88        
cufflinks 10.133       High
cufflinks 8.802        
cufflinks 9.057     High  
cufflinks 8.648        
cufflinks 8.29     High  
cufflinks 8.318        
cufflinks 9.879     High High
cufflinks 18.068       High
cufflinks 12.791       Low
cufflinks 14.996        
cufflinks 14.926        
cufflinks 17.229        
cufflinks 15.262        

0 Strain