Gene : Potri.017G114900 P. trichocarpa v3.0
Defline:  (1 of 4) 5.3.99.9 - Neoxanthin synthase / NSY Genomic Order:  1149
Name:  ? Potri.017G114900 Secondary Identifier:  ? PAC:26984857
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PWY-6809 Populus trichocarpa pathologic  
Ptrichocarpa PWY-695 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.017G114900 0.5kb upstream 0.5kb upstream 2804 true Chr17: 13040653-13043456 Populus trichocarpa
Potri.017G114900 0.5kb upstream 0.5kb upstream 500 false Chr17: 13040653-13041152 Populus trichocarpa
Potri.017G114900 0.5kb downstream 0.5kb downstream 2804 true Chr17: 13041153-13043956 Populus trichocarpa
Potri.017G114900 0.5kb downstream 0.5kb downstream 500 false Chr17: 13043457-13043956 Populus trichocarpa
Potri.017G114900 1.0kb upstream 1.0kb upstream 3304 true Chr17: 13040153-13043456 Populus trichocarpa
Potri.017G114900 1.0kb upstream 1.0kb upstream 1000 false Chr17: 13040153-13041152 Populus trichocarpa
Potri.017G114900 1.0kb downstream 1.0kb downstream 3304 true Chr17: 13041153-13044456 Populus trichocarpa
Potri.017G114900 1.0kb downstream 1.0kb downstream 1000 false Chr17: 13043457-13044456 Populus trichocarpa
Potri.017G114900 2.0kb upstream 2.0kb upstream 4304 true Chr17: 13039153-13043456 Populus trichocarpa
Potri.017G114900 2.0kb upstream 2.0kb upstream 2000 false Chr17: 13039153-13041152 Populus trichocarpa
Potri.017G114900 2.0kb downstream 2.0kb downstream 4304 true Chr17: 13041153-13045456 Populus trichocarpa
Potri.017G114900 2.0kb downstream 2.0kb downstream 2000 false Chr17: 13043457-13045456 Populus trichocarpa
Potri.017G114900 5.0kb upstream 5.0kb upstream 7304 true Chr17: 13036153-13043456 Populus trichocarpa
Potri.017G114900 5.0kb upstream 5.0kb upstream 5000 false Chr17: 13036153-13041152 Populus trichocarpa
Potri.017G114900 5.0kb downstream 5.0kb downstream 7304 true Chr17: 13041153-13048456 Populus trichocarpa
Potri.017G114900 5.0kb downstream 5.0kb downstream 5000 false Chr17: 13043457-13048456 Populus trichocarpa
Potri.017G114900 10.0kb upstream 10.0kb upstream 12304 true Chr17: 13031153-13043456 Populus trichocarpa
Potri.017G114900 10.0kb upstream 10.0kb upstream 10000 false Chr17: 13031153-13041152 Populus trichocarpa
Potri.017G114900 10.0kb downstream 10.0kb downstream 12304 true Chr17: 13041153-13053456 Populus trichocarpa
Potri.017G114900 10.0kb downstream 10.0kb downstream 10000 false Chr17: 13043457-13053456 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.17        
cufflinks 0.038     Low  
cufflinks 0.05     Low  
cufflinks 0.09     Low  
cufflinks 0.173        
cufflinks 0.068     Low  
cufflinks 0.016     Low Low
cufflinks 0.164        
cufflinks 0.02     Low Low
cufflinks 0.475       High
cufflinks 0.011     Low Low
cufflinks 0.339       High
cufflinks 0.201        
cufflinks 0.064     Low  
cufflinks 0.01     Low Low
cufflinks 0.118     Low  
cufflinks 0.093     Low  
cufflinks 0.046     Low  
cufflinks 0.125        
cufflinks 0.183        
cufflinks 0.178        
cufflinks 0.083     Low  
cufflinks 0.189        
cufflinks 0.454       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.138     Low  
cufflinks 0.39     Low  
cufflinks 0.206     Low  
cufflinks 0.406        
cufflinks 0.184     Low  

0 Strain