Gene : Potri.001G341700 P. trichocarpa v3.0
Defline:  (1 of 3) PTHR11177//PTHR11177:SF186 - CHITINASE // SUBFAMILY NOT NAMED Genomic Order:  3417
Name:  ? Potri.001G341700 Secondary Identifier:  ? PAC:27048681
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PWY-6902 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.001G341700 0.5kb upstream 0.5kb upstream 1511 true Chr01: 34664668-34666178 Populus trichocarpa
Potri.001G341700 0.5kb upstream 0.5kb upstream 500 false Chr01: 34664668-34665167 Populus trichocarpa
Potri.001G341700 0.5kb downstream 0.5kb downstream 1511 true Chr01: 34665168-34666678 Populus trichocarpa
Potri.001G341700 0.5kb downstream 0.5kb downstream 500 false Chr01: 34666179-34666678 Populus trichocarpa
Potri.001G341700 1.0kb upstream 1.0kb upstream 2011 true Chr01: 34664168-34666178 Populus trichocarpa
Potri.001G341700 1.0kb upstream 1.0kb upstream 1000 false Chr01: 34664168-34665167 Populus trichocarpa
Potri.001G341700 1.0kb downstream 1.0kb downstream 2011 true Chr01: 34665168-34667178 Populus trichocarpa
Potri.001G341700 1.0kb downstream 1.0kb downstream 1000 false Chr01: 34666179-34667178 Populus trichocarpa
Potri.001G341700 2.0kb upstream 2.0kb upstream 3011 true Chr01: 34663168-34666178 Populus trichocarpa
Potri.001G341700 2.0kb upstream 2.0kb upstream 2000 false Chr01: 34663168-34665167 Populus trichocarpa
Potri.001G341700 2.0kb downstream 2.0kb downstream 3011 true Chr01: 34665168-34668178 Populus trichocarpa
Potri.001G341700 2.0kb downstream 2.0kb downstream 2000 false Chr01: 34666179-34668178 Populus trichocarpa
Potri.001G341700 5.0kb upstream 5.0kb upstream 6011 true Chr01: 34660168-34666178 Populus trichocarpa
Potri.001G341700 5.0kb upstream 5.0kb upstream 5000 false Chr01: 34660168-34665167 Populus trichocarpa
Potri.001G341700 5.0kb downstream 5.0kb downstream 6011 true Chr01: 34665168-34671178 Populus trichocarpa
Potri.001G341700 5.0kb downstream 5.0kb downstream 5000 false Chr01: 34666179-34671178 Populus trichocarpa
Potri.001G341700 10.0kb upstream 10.0kb upstream 11011 true Chr01: 34655168-34666178 Populus trichocarpa
Potri.001G341700 10.0kb upstream 10.0kb upstream 10000 false Chr01: 34655168-34665167 Populus trichocarpa
Potri.001G341700 10.0kb downstream 10.0kb downstream 11011 true Chr01: 34665168-34676178 Populus trichocarpa
Potri.001G341700 10.0kb downstream 10.0kb downstream 10000 false Chr01: 34666179-34676178 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.978        
cufflinks 1.284       Low
cufflinks 1.912       Low
cufflinks 5.589        
cufflinks 6.679        
cufflinks 3.976        
cufflinks 3.228        
cufflinks 6.41        
cufflinks 4.143        
cufflinks 2.647       Low
cufflinks 7.257        
cufflinks 7.817        
cufflinks 12.186     High High
cufflinks 18.602     High High
cufflinks 22.2     High High
cufflinks 4.365        
cufflinks 4.249        
cufflinks 3.762        
cufflinks 11.621     High High
cufflinks 3.766        
cufflinks 5.921        
cufflinks 3.46        
cufflinks 4.704        
cufflinks 4.102        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.099     Low  
cufflinks 0.232     Low  
cufflinks 0.102     Low  
cufflinks 0.303     Low  
cufflinks 0.089     Low  

0 Strain