Gene : Gorai.001G012900 G. raimondii v2.1
Defline:  (1 of 2) PTHR13789:SF207 - LYCOPENE EPSILON CYCLASE, CHLOROPLASTIC Genomic Order:  129
Name:  ? Gorai.001G012900 Secondary Identifier:  ? PAC:26822398
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Graimondii CAROTENOID-PWY Gossypium raimondii pathologic  
Graimondii PWY-5175 Gossypium raimondii pathologic  
Graimondii PWY-5946 Gossypium raimondii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Gorai.001G012900 0.5kb upstream 0.5kb upstream 7781 true Chr01: 1222281-1230061 Gossypium raimondii
Gorai.001G012900 0.5kb upstream 0.5kb upstream 500 false Chr01: 1229562-1230061 Gossypium raimondii
Gorai.001G012900 0.5kb downstream 0.5kb downstream 7781 true Chr01: 1221781-1229561 Gossypium raimondii
Gorai.001G012900 0.5kb downstream 0.5kb downstream 500 false Chr01: 1221781-1222280 Gossypium raimondii
Gorai.001G012900 1.0kb upstream 1.0kb upstream 8281 true Chr01: 1222281-1230561 Gossypium raimondii
Gorai.001G012900 1.0kb upstream 1.0kb upstream 1000 false Chr01: 1229562-1230561 Gossypium raimondii
Gorai.001G012900 1.0kb downstream 1.0kb downstream 8281 true Chr01: 1221281-1229561 Gossypium raimondii
Gorai.001G012900 1.0kb downstream 1.0kb downstream 1000 false Chr01: 1221281-1222280 Gossypium raimondii
Gorai.001G012900 2.0kb upstream 2.0kb upstream 9281 true Chr01: 1222281-1231561 Gossypium raimondii
Gorai.001G012900 2.0kb upstream 2.0kb upstream 2000 false Chr01: 1229562-1231561 Gossypium raimondii
Gorai.001G012900 2.0kb downstream 2.0kb downstream 9281 true Chr01: 1220281-1229561 Gossypium raimondii
Gorai.001G012900 2.0kb downstream 2.0kb downstream 2000 false Chr01: 1220281-1222280 Gossypium raimondii
Gorai.001G012900 5.0kb upstream 5.0kb upstream 12281 true Chr01: 1222281-1234561 Gossypium raimondii
Gorai.001G012900 5.0kb upstream 5.0kb upstream 5000 false Chr01: 1229562-1234561 Gossypium raimondii
Gorai.001G012900 5.0kb downstream 5.0kb downstream 12281 true Chr01: 1217281-1229561 Gossypium raimondii
Gorai.001G012900 5.0kb downstream 5.0kb downstream 5000 false Chr01: 1217281-1222280 Gossypium raimondii
Gorai.001G012900 10.0kb upstream 10.0kb upstream 17281 true Chr01: 1222281-1239561 Gossypium raimondii
Gorai.001G012900 10.0kb upstream 10.0kb upstream 10000 false Chr01: 1229562-1239561 Gossypium raimondii
Gorai.001G012900 10.0kb downstream 10.0kb downstream 17281 true Chr01: 1212281-1229561 Gossypium raimondii
Gorai.001G012900 10.0kb downstream 10.0kb downstream 10000 false Chr01: 1212281-1222280 Gossypium raimondii

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123834922 5264 Brassicales-Malvales View MSA
124342530 5266 SBM View MSA
124243060 5268 Malvidae View MSA
124068333 5270 Rosid View MSA
123739919 5271 Pentapetalae View MSA
122791667 5272 Eudicot View MSA
122041543 5273 Angiosperm View MSA
121345455 5274 Embryophyte View MSA
123424108 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain