Gene : Gorai.001G083700 G. raimondii v2.1
Defline:  (1 of 1) PTHR31480:SF2 - PHYTOENE SYNTHASE, CHLOROPLASTIC Genomic Order:  837
Name:  ? Gorai.001G083700 Secondary Identifier:  ? PAC:26819400
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Graimondii CAROTENOID-PWY Gossypium raimondii pathologic  
Graimondii PWY-6475 Gossypium raimondii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Gorai.001G083700 0.5kb upstream 0.5kb upstream 2793 true Chr01: 8837490-8840282 Gossypium raimondii
Gorai.001G083700 0.5kb upstream 0.5kb upstream 500 false Chr01: 8839783-8840282 Gossypium raimondii
Gorai.001G083700 0.5kb downstream 0.5kb downstream 2793 true Chr01: 8836990-8839782 Gossypium raimondii
Gorai.001G083700 0.5kb downstream 0.5kb downstream 500 false Chr01: 8836990-8837489 Gossypium raimondii
Gorai.001G083700 1.0kb upstream 1.0kb upstream 3293 true Chr01: 8837490-8840782 Gossypium raimondii
Gorai.001G083700 1.0kb upstream 1.0kb upstream 1000 false Chr01: 8839783-8840782 Gossypium raimondii
Gorai.001G083700 1.0kb downstream 1.0kb downstream 3293 true Chr01: 8836490-8839782 Gossypium raimondii
Gorai.001G083700 1.0kb downstream 1.0kb downstream 1000 false Chr01: 8836490-8837489 Gossypium raimondii
Gorai.001G083700 2.0kb upstream 2.0kb upstream 4293 true Chr01: 8837490-8841782 Gossypium raimondii
Gorai.001G083700 2.0kb upstream 2.0kb upstream 2000 false Chr01: 8839783-8841782 Gossypium raimondii
Gorai.001G083700 2.0kb downstream 2.0kb downstream 4293 true Chr01: 8835490-8839782 Gossypium raimondii
Gorai.001G083700 2.0kb downstream 2.0kb downstream 2000 false Chr01: 8835490-8837489 Gossypium raimondii
Gorai.001G083700 5.0kb upstream 5.0kb upstream 7293 true Chr01: 8837490-8844782 Gossypium raimondii
Gorai.001G083700 5.0kb upstream 5.0kb upstream 5000 false Chr01: 8839783-8844782 Gossypium raimondii
Gorai.001G083700 5.0kb downstream 5.0kb downstream 7293 true Chr01: 8832490-8839782 Gossypium raimondii
Gorai.001G083700 5.0kb downstream 5.0kb downstream 5000 false Chr01: 8832490-8837489 Gossypium raimondii
Gorai.001G083700 10.0kb upstream 10.0kb upstream 12293 true Chr01: 8837490-8849782 Gossypium raimondii
Gorai.001G083700 10.0kb upstream 10.0kb upstream 10000 false Chr01: 8839783-8849782 Gossypium raimondii
Gorai.001G083700 10.0kb downstream 10.0kb downstream 12293 true Chr01: 8827490-8839782 Gossypium raimondii
Gorai.001G083700 10.0kb downstream 10.0kb downstream 10000 false Chr01: 8827490-8837489 Gossypium raimondii

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041269 5273 Angiosperm View MSA
123829809 5264 Brassicales-Malvales View MSA
124345575 5266 SBM View MSA
124251202 5268 Malvidae View MSA
124069921 5270 Rosid View MSA
123743557 5271 Pentapetalae View MSA
122795955 5272 Eudicot View MSA
121345575 5274 Embryophyte View MSA
123426823 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain