Gene : Gorai.001G201800 G. raimondii v2.1
Defline:  (1 of 3) PTHR31262:SF4 - RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A, CHLOROPLASTIC-RELATED Genomic Order:  2018
Name:  ? Gorai.001G201800 Secondary Identifier:  ? PAC:26819965
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Graimondii CALVIN-PWY Gossypium raimondii pathologic  
Graimondii PHOTOALL-PWY Gossypium raimondii pathologic  
Graimondii PWY-5723 Gossypium raimondii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Gorai.001G201800 0.5kb upstream 0.5kb upstream 1676 true Chr01: 38910134-38911809 Gossypium raimondii
Gorai.001G201800 0.5kb upstream 0.5kb upstream 500 false Chr01: 38910134-38910633 Gossypium raimondii
Gorai.001G201800 0.5kb downstream 0.5kb downstream 1676 true Chr01: 38910634-38912309 Gossypium raimondii
Gorai.001G201800 0.5kb downstream 0.5kb downstream 500 false Chr01: 38911810-38912309 Gossypium raimondii
Gorai.001G201800 1.0kb upstream 1.0kb upstream 2176 true Chr01: 38909634-38911809 Gossypium raimondii
Gorai.001G201800 1.0kb upstream 1.0kb upstream 1000 false Chr01: 38909634-38910633 Gossypium raimondii
Gorai.001G201800 1.0kb downstream 1.0kb downstream 2176 true Chr01: 38910634-38912809 Gossypium raimondii
Gorai.001G201800 1.0kb downstream 1.0kb downstream 1000 false Chr01: 38911810-38912809 Gossypium raimondii
Gorai.001G201800 2.0kb upstream 2.0kb upstream 3176 true Chr01: 38908634-38911809 Gossypium raimondii
Gorai.001G201800 2.0kb upstream 2.0kb upstream 2000 false Chr01: 38908634-38910633 Gossypium raimondii
Gorai.001G201800 2.0kb downstream 2.0kb downstream 3176 true Chr01: 38910634-38913809 Gossypium raimondii
Gorai.001G201800 2.0kb downstream 2.0kb downstream 2000 false Chr01: 38911810-38913809 Gossypium raimondii
Gorai.001G201800 5.0kb upstream 5.0kb upstream 6176 true Chr01: 38905634-38911809 Gossypium raimondii
Gorai.001G201800 5.0kb upstream 5.0kb upstream 5000 false Chr01: 38905634-38910633 Gossypium raimondii
Gorai.001G201800 5.0kb downstream 5.0kb downstream 6176 true Chr01: 38910634-38916809 Gossypium raimondii
Gorai.001G201800 5.0kb downstream 5.0kb downstream 5000 false Chr01: 38911810-38916809 Gossypium raimondii
Gorai.001G201800 10.0kb upstream 10.0kb upstream 11176 true Chr01: 38900634-38911809 Gossypium raimondii
Gorai.001G201800 10.0kb upstream 10.0kb upstream 10000 false Chr01: 38900634-38910633 Gossypium raimondii
Gorai.001G201800 10.0kb downstream 10.0kb downstream 11176 true Chr01: 38910634-38921809 Gossypium raimondii
Gorai.001G201800 10.0kb downstream 10.0kb downstream 10000 false Chr01: 38911810-38921809 Gossypium raimondii

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123836682 5264 Brassicales-Malvales View MSA
124340616 5266 SBM View MSA
124250367 5268 Malvidae View MSA
124066802 5270 Rosid View MSA
123747186 5271 Pentapetalae View MSA
122796864 5272 Eudicot View MSA
122046951 5273 Angiosperm View MSA
121348432 5274 Embryophyte View MSA
123426346 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain