Gene : Gorai.001G239200 G. raimondii v2.1
Defline:  (1 of 3) PTHR12526:SF337 - STARCH SYNTHASE 2, CHLOROPLASTIC/AMYLOPLASTIC Genomic Order:  2392
Name:  ? Gorai.001G239200 Secondary Identifier:  ? PAC:26824082
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Graimondii GLYCOGENSYNTH-PWY Gossypium raimondii pathologic  
Graimondii PWY-622 Gossypium raimondii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Gorai.001G239200 0.5kb upstream 0.5kb upstream 5994 true Chr01: 47803185-47809178 Gossypium raimondii
Gorai.001G239200 0.5kb upstream 0.5kb upstream 500 false Chr01: 47803185-47803684 Gossypium raimondii
Gorai.001G239200 0.5kb downstream 0.5kb downstream 5994 true Chr01: 47803685-47809678 Gossypium raimondii
Gorai.001G239200 0.5kb downstream 0.5kb downstream 500 false Chr01: 47809179-47809678 Gossypium raimondii
Gorai.001G239200 1.0kb upstream 1.0kb upstream 6494 true Chr01: 47802685-47809178 Gossypium raimondii
Gorai.001G239200 1.0kb upstream 1.0kb upstream 1000 false Chr01: 47802685-47803684 Gossypium raimondii
Gorai.001G239200 1.0kb downstream 1.0kb downstream 6494 true Chr01: 47803685-47810178 Gossypium raimondii
Gorai.001G239200 1.0kb downstream 1.0kb downstream 1000 false Chr01: 47809179-47810178 Gossypium raimondii
Gorai.001G239200 2.0kb upstream 2.0kb upstream 7494 true Chr01: 47801685-47809178 Gossypium raimondii
Gorai.001G239200 2.0kb upstream 2.0kb upstream 2000 false Chr01: 47801685-47803684 Gossypium raimondii
Gorai.001G239200 2.0kb downstream 2.0kb downstream 7494 true Chr01: 47803685-47811178 Gossypium raimondii
Gorai.001G239200 2.0kb downstream 2.0kb downstream 2000 false Chr01: 47809179-47811178 Gossypium raimondii
Gorai.001G239200 5.0kb upstream 5.0kb upstream 10494 true Chr01: 47798685-47809178 Gossypium raimondii
Gorai.001G239200 5.0kb upstream 5.0kb upstream 5000 false Chr01: 47798685-47803684 Gossypium raimondii
Gorai.001G239200 5.0kb downstream 5.0kb downstream 10494 true Chr01: 47803685-47814178 Gossypium raimondii
Gorai.001G239200 5.0kb downstream 5.0kb downstream 5000 false Chr01: 47809179-47814178 Gossypium raimondii
Gorai.001G239200 10.0kb upstream 10.0kb upstream 15494 true Chr01: 47793685-47809178 Gossypium raimondii
Gorai.001G239200 10.0kb upstream 10.0kb upstream 10000 false Chr01: 47793685-47803684 Gossypium raimondii
Gorai.001G239200 10.0kb downstream 10.0kb downstream 15494 true Chr01: 47803685-47819178 Gossypium raimondii
Gorai.001G239200 10.0kb downstream 10.0kb downstream 10000 false Chr01: 47809179-47819178 Gossypium raimondii

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123831614 5264 Brassicales-Malvales View MSA
124342680 5266 SBM View MSA
124239099 5268 Malvidae View MSA
124066587 5270 Rosid View MSA
123744003 5271 Pentapetalae View MSA
122787814 5272 Eudicot View MSA
122042262 5273 Angiosperm View MSA
121347324 5274 Embryophyte View MSA
123426751 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain