Gene : Gorai.003G003800 G. raimondii v2.1
Defline:  (1 of 17) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  38
Name:  ? Gorai.003G003800 Secondary Identifier:  ? PAC:26800131
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Gorai.003G003800 0.5kb upstream 0.5kb upstream 725 true Chr03: 231969-232693 Gossypium raimondii
Gorai.003G003800 0.5kb upstream 0.5kb upstream 500 false Chr03: 231969-232468 Gossypium raimondii
Gorai.003G003800 0.5kb downstream 0.5kb downstream 725 true Chr03: 232469-233193 Gossypium raimondii
Gorai.003G003800 0.5kb downstream 0.5kb downstream 500 false Chr03: 232694-233193 Gossypium raimondii
Gorai.003G003800 1.0kb upstream 1.0kb upstream 1225 true Chr03: 231469-232693 Gossypium raimondii
Gorai.003G003800 1.0kb upstream 1.0kb upstream 1000 false Chr03: 231469-232468 Gossypium raimondii
Gorai.003G003800 1.0kb downstream 1.0kb downstream 1225 true Chr03: 232469-233693 Gossypium raimondii
Gorai.003G003800 1.0kb downstream 1.0kb downstream 1000 false Chr03: 232694-233693 Gossypium raimondii
Gorai.003G003800 2.0kb upstream 2.0kb upstream 2225 true Chr03: 230469-232693 Gossypium raimondii
Gorai.003G003800 2.0kb upstream 2.0kb upstream 2000 false Chr03: 230469-232468 Gossypium raimondii
Gorai.003G003800 2.0kb downstream 2.0kb downstream 2225 true Chr03: 232469-234693 Gossypium raimondii
Gorai.003G003800 2.0kb downstream 2.0kb downstream 2000 false Chr03: 232694-234693 Gossypium raimondii
Gorai.003G003800 5.0kb upstream 5.0kb upstream 5225 true Chr03: 227469-232693 Gossypium raimondii
Gorai.003G003800 5.0kb upstream 5.0kb upstream 5000 false Chr03: 227469-232468 Gossypium raimondii
Gorai.003G003800 5.0kb downstream 5.0kb downstream 5225 true Chr03: 232469-237693 Gossypium raimondii
Gorai.003G003800 5.0kb downstream 5.0kb downstream 5000 false Chr03: 232694-237693 Gossypium raimondii
Gorai.003G003800 10.0kb upstream 10.0kb upstream 10225 true Chr03: 222469-232693 Gossypium raimondii
Gorai.003G003800 10.0kb upstream 10.0kb upstream 10000 false Chr03: 222469-232468 Gossypium raimondii
Gorai.003G003800 10.0kb downstream 10.0kb downstream 10225 true Chr03: 232469-242693 Gossypium raimondii
Gorai.003G003800 10.0kb downstream 10.0kb downstream 10000 false Chr03: 232694-242693 Gossypium raimondii

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123839959 5264 Brassicales-Malvales View MSA
124345918 5266 SBM View MSA
124248769 5268 Malvidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain