Gene : Gorai.003G085800 G. raimondii v2.1
Defline:  (1 of 2) 4.6.1.12 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / MECDP-synthase Genomic Order:  858
Name:  ? Gorai.003G085800 Secondary Identifier:  ? PAC:26797618
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Graimondii PWY-7560 Gossypium raimondii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Gorai.003G085800 0.5kb upstream 0.5kb upstream 7887 true Chr03: 21706316-21714202 Gossypium raimondii
Gorai.003G085800 0.5kb upstream 0.5kb upstream 500 false Chr03: 21706316-21706815 Gossypium raimondii
Gorai.003G085800 0.5kb downstream 0.5kb downstream 7887 true Chr03: 21706816-21714702 Gossypium raimondii
Gorai.003G085800 0.5kb downstream 0.5kb downstream 500 false Chr03: 21714203-21714702 Gossypium raimondii
Gorai.003G085800 1.0kb upstream 1.0kb upstream 8387 true Chr03: 21705816-21714202 Gossypium raimondii
Gorai.003G085800 1.0kb upstream 1.0kb upstream 1000 false Chr03: 21705816-21706815 Gossypium raimondii
Gorai.003G085800 1.0kb downstream 1.0kb downstream 8387 true Chr03: 21706816-21715202 Gossypium raimondii
Gorai.003G085800 1.0kb downstream 1.0kb downstream 1000 false Chr03: 21714203-21715202 Gossypium raimondii
Gorai.003G085800 2.0kb upstream 2.0kb upstream 9387 true Chr03: 21704816-21714202 Gossypium raimondii
Gorai.003G085800 2.0kb upstream 2.0kb upstream 2000 false Chr03: 21704816-21706815 Gossypium raimondii
Gorai.003G085800 2.0kb downstream 2.0kb downstream 9387 true Chr03: 21706816-21716202 Gossypium raimondii
Gorai.003G085800 2.0kb downstream 2.0kb downstream 2000 false Chr03: 21714203-21716202 Gossypium raimondii
Gorai.003G085800 5.0kb upstream 5.0kb upstream 12387 true Chr03: 21701816-21714202 Gossypium raimondii
Gorai.003G085800 5.0kb upstream 5.0kb upstream 5000 false Chr03: 21701816-21706815 Gossypium raimondii
Gorai.003G085800 5.0kb downstream 5.0kb downstream 12387 true Chr03: 21706816-21719202 Gossypium raimondii
Gorai.003G085800 5.0kb downstream 5.0kb downstream 5000 false Chr03: 21714203-21719202 Gossypium raimondii
Gorai.003G085800 10.0kb upstream 10.0kb upstream 17387 true Chr03: 21696816-21714202 Gossypium raimondii
Gorai.003G085800 10.0kb upstream 10.0kb upstream 10000 false Chr03: 21696816-21706815 Gossypium raimondii
Gorai.003G085800 10.0kb downstream 10.0kb downstream 17387 true Chr03: 21706816-21724202 Gossypium raimondii
Gorai.003G085800 10.0kb downstream 10.0kb downstream 10000 false Chr03: 21714203-21724202 Gossypium raimondii

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123835150 5264 Brassicales-Malvales View MSA
124346414 5266 SBM View MSA
124238483 5268 Malvidae View MSA
124062148 5270 Rosid View MSA
123737612 5271 Pentapetalae View MSA
122786124 5272 Eudicot View MSA
122042234 5273 Angiosperm View MSA
121344039 5274 Embryophyte View MSA
123423768 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain