Gene : Gorai.004G046400 G. raimondii v2.1
Defline:  (1 of 5) PTHR31843:SF2 - ALLENE OXIDE CYCLASE 1, CHLOROPLASTIC-RELATED Genomic Order:  464
Name:  ? Gorai.004G046400 Secondary Identifier:  ? PAC:26772911
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Graimondii PWY-735 Gossypium raimondii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Gorai.004G046400 0.5kb upstream 0.5kb upstream 1664 true Chr04: 4106069-4107732 Gossypium raimondii
Gorai.004G046400 0.5kb upstream 0.5kb upstream 500 false Chr04: 4107233-4107732 Gossypium raimondii
Gorai.004G046400 0.5kb downstream 0.5kb downstream 1664 true Chr04: 4105569-4107232 Gossypium raimondii
Gorai.004G046400 0.5kb downstream 0.5kb downstream 500 false Chr04: 4105569-4106068 Gossypium raimondii
Gorai.004G046400 1.0kb upstream 1.0kb upstream 2164 true Chr04: 4106069-4108232 Gossypium raimondii
Gorai.004G046400 1.0kb upstream 1.0kb upstream 1000 false Chr04: 4107233-4108232 Gossypium raimondii
Gorai.004G046400 1.0kb downstream 1.0kb downstream 2164 true Chr04: 4105069-4107232 Gossypium raimondii
Gorai.004G046400 1.0kb downstream 1.0kb downstream 1000 false Chr04: 4105069-4106068 Gossypium raimondii
Gorai.004G046400 2.0kb upstream 2.0kb upstream 3164 true Chr04: 4106069-4109232 Gossypium raimondii
Gorai.004G046400 2.0kb upstream 2.0kb upstream 2000 false Chr04: 4107233-4109232 Gossypium raimondii
Gorai.004G046400 2.0kb downstream 2.0kb downstream 3164 true Chr04: 4104069-4107232 Gossypium raimondii
Gorai.004G046400 2.0kb downstream 2.0kb downstream 2000 false Chr04: 4104069-4106068 Gossypium raimondii
Gorai.004G046400 5.0kb upstream 5.0kb upstream 6164 true Chr04: 4106069-4112232 Gossypium raimondii
Gorai.004G046400 5.0kb upstream 5.0kb upstream 5000 false Chr04: 4107233-4112232 Gossypium raimondii
Gorai.004G046400 5.0kb downstream 5.0kb downstream 6164 true Chr04: 4101069-4107232 Gossypium raimondii
Gorai.004G046400 5.0kb downstream 5.0kb downstream 5000 false Chr04: 4101069-4106068 Gossypium raimondii
Gorai.004G046400 10.0kb upstream 10.0kb upstream 11164 true Chr04: 4106069-4117232 Gossypium raimondii
Gorai.004G046400 10.0kb upstream 10.0kb upstream 10000 false Chr04: 4107233-4117232 Gossypium raimondii
Gorai.004G046400 10.0kb downstream 10.0kb downstream 11164 true Chr04: 4096069-4107232 Gossypium raimondii
Gorai.004G046400 10.0kb downstream 10.0kb downstream 10000 false Chr04: 4096069-4106068 Gossypium raimondii

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123826972 5264 Brassicales-Malvales View MSA
124348602 5266 SBM View MSA
124252758 5268 Malvidae View MSA
124066771 5270 Rosid View MSA
123739753 5271 Pentapetalae View MSA
122789032 5272 Eudicot View MSA
122045897 5273 Angiosperm View MSA
121350459 5274 Embryophyte View MSA
123426138 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain