Gene : Gorai.012G088600 G. raimondii v2.1
Defline:  (1 of 1) PTHR10742:SF229 - PROTOPORPHYRINOGEN OXIDASE 2, CHLOROPLASTIC/MITOCHONDRIAL Genomic Order:  886
Name:  ? Gorai.012G088600 Secondary Identifier:  ? PAC:26826694
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Graimondii CHLOROPHYLL-SYN Gossypium raimondii pathologic  
Graimondii HEME-BIOSYNTHESIS-II Gossypium raimondii pathologic  
Graimondii PWY-5918 Gossypium raimondii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Gorai.012G088600 0.5kb upstream 0.5kb upstream 8065 true Chr12: 15159759-15167823 Gossypium raimondii
Gorai.012G088600 0.5kb upstream 0.5kb upstream 500 false Chr12: 15167324-15167823 Gossypium raimondii
Gorai.012G088600 0.5kb downstream 0.5kb downstream 8065 true Chr12: 15159259-15167323 Gossypium raimondii
Gorai.012G088600 0.5kb downstream 0.5kb downstream 500 false Chr12: 15159259-15159758 Gossypium raimondii
Gorai.012G088600 1.0kb upstream 1.0kb upstream 8565 true Chr12: 15159759-15168323 Gossypium raimondii
Gorai.012G088600 1.0kb upstream 1.0kb upstream 1000 false Chr12: 15167324-15168323 Gossypium raimondii
Gorai.012G088600 1.0kb downstream 1.0kb downstream 8565 true Chr12: 15158759-15167323 Gossypium raimondii
Gorai.012G088600 1.0kb downstream 1.0kb downstream 1000 false Chr12: 15158759-15159758 Gossypium raimondii
Gorai.012G088600 2.0kb upstream 2.0kb upstream 9565 true Chr12: 15159759-15169323 Gossypium raimondii
Gorai.012G088600 2.0kb upstream 2.0kb upstream 2000 false Chr12: 15167324-15169323 Gossypium raimondii
Gorai.012G088600 2.0kb downstream 2.0kb downstream 9565 true Chr12: 15157759-15167323 Gossypium raimondii
Gorai.012G088600 2.0kb downstream 2.0kb downstream 2000 false Chr12: 15157759-15159758 Gossypium raimondii
Gorai.012G088600 5.0kb upstream 5.0kb upstream 12565 true Chr12: 15159759-15172323 Gossypium raimondii
Gorai.012G088600 5.0kb upstream 5.0kb upstream 5000 false Chr12: 15167324-15172323 Gossypium raimondii
Gorai.012G088600 5.0kb downstream 5.0kb downstream 12565 true Chr12: 15154759-15167323 Gossypium raimondii
Gorai.012G088600 5.0kb downstream 5.0kb downstream 5000 false Chr12: 15154759-15159758 Gossypium raimondii
Gorai.012G088600 10.0kb upstream 10.0kb upstream 17565 true Chr12: 15159759-15177323 Gossypium raimondii
Gorai.012G088600 10.0kb upstream 10.0kb upstream 10000 false Chr12: 15167324-15177323 Gossypium raimondii
Gorai.012G088600 10.0kb downstream 10.0kb downstream 17565 true Chr12: 15149759-15167323 Gossypium raimondii
Gorai.012G088600 10.0kb downstream 10.0kb downstream 10000 false Chr12: 15149759-15159758 Gossypium raimondii

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123829368 5264 Brassicales-Malvales View MSA
124344124 5266 SBM View MSA
124241673 5268 Malvidae View MSA
124068806 5270 Rosid View MSA
123747490 5271 Pentapetalae View MSA
122787686 5272 Eudicot View MSA
122041725 5273 Angiosperm View MSA
121347394 5274 Embryophyte View MSA
123424000 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain