Gene : Gorai.012G148800 G. raimondii v2.1
Defline:  (1 of 14) PF00124 - Photosynthetic reaction centre protein (Photo_RC) Genomic Order:  1488
Name:  ? Gorai.012G148800 Secondary Identifier:  ? PAC:26828943
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Graimondii PHOTOALL-PWY Gossypium raimondii pathologic  
Graimondii PWY-101 Gossypium raimondii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Gorai.012G148800 0.5kb upstream 0.5kb upstream 832 true Chr12: 32314029-32314860 Gossypium raimondii
Gorai.012G148800 0.5kb upstream 0.5kb upstream 500 false Chr12: 32314361-32314860 Gossypium raimondii
Gorai.012G148800 0.5kb downstream 0.5kb downstream 832 true Chr12: 32313529-32314360 Gossypium raimondii
Gorai.012G148800 0.5kb downstream 0.5kb downstream 500 false Chr12: 32313529-32314028 Gossypium raimondii
Gorai.012G148800 1.0kb upstream 1.0kb upstream 1332 true Chr12: 32314029-32315360 Gossypium raimondii
Gorai.012G148800 1.0kb upstream 1.0kb upstream 1000 false Chr12: 32314361-32315360 Gossypium raimondii
Gorai.012G148800 1.0kb downstream 1.0kb downstream 1332 true Chr12: 32313029-32314360 Gossypium raimondii
Gorai.012G148800 1.0kb downstream 1.0kb downstream 1000 false Chr12: 32313029-32314028 Gossypium raimondii
Gorai.012G148800 2.0kb upstream 2.0kb upstream 2332 true Chr12: 32314029-32316360 Gossypium raimondii
Gorai.012G148800 2.0kb upstream 2.0kb upstream 2000 false Chr12: 32314361-32316360 Gossypium raimondii
Gorai.012G148800 2.0kb downstream 2.0kb downstream 2332 true Chr12: 32312029-32314360 Gossypium raimondii
Gorai.012G148800 2.0kb downstream 2.0kb downstream 2000 false Chr12: 32312029-32314028 Gossypium raimondii
Gorai.012G148800 5.0kb upstream 5.0kb upstream 5332 true Chr12: 32314029-32319360 Gossypium raimondii
Gorai.012G148800 5.0kb upstream 5.0kb upstream 5000 false Chr12: 32314361-32319360 Gossypium raimondii
Gorai.012G148800 5.0kb downstream 5.0kb downstream 5332 true Chr12: 32309029-32314360 Gossypium raimondii
Gorai.012G148800 5.0kb downstream 5.0kb downstream 5000 false Chr12: 32309029-32314028 Gossypium raimondii
Gorai.012G148800 10.0kb upstream 10.0kb upstream 10332 true Chr12: 32314029-32324360 Gossypium raimondii
Gorai.012G148800 10.0kb upstream 10.0kb upstream 10000 false Chr12: 32314361-32324360 Gossypium raimondii
Gorai.012G148800 10.0kb downstream 10.0kb downstream 10332 true Chr12: 32304029-32314360 Gossypium raimondii
Gorai.012G148800 10.0kb downstream 10.0kb downstream 10000 false Chr12: 32304029-32314028 Gossypium raimondii

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123841385 5264 Brassicales-Malvales View MSA
124322915 5266 SBM View MSA
124169258 5268 Malvidae View MSA
123892324 5270 Rosid View MSA
123750687 5271 Pentapetalae View MSA
122795300 5272 Eudicot View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain