Gene : Gorai.012G046100 G. raimondii v2.1
Defline:  (1 of 1) PF02900 - Catalytic LigB subunit of aromatic ring-opening dioxygenase (LigB) Genomic Order:  461
Name:  ? Gorai.012G046100 Secondary Identifier:  ? PAC:26826522
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Gorai.012G046100 0.5kb upstream 0.5kb upstream 2920 true Chr12: 5773811-5776730 Gossypium raimondii
Gorai.012G046100 0.5kb upstream 0.5kb upstream 500 false Chr12: 5773811-5774310 Gossypium raimondii
Gorai.012G046100 0.5kb downstream 0.5kb downstream 2920 true Chr12: 5774311-5777230 Gossypium raimondii
Gorai.012G046100 0.5kb downstream 0.5kb downstream 500 false Chr12: 5776731-5777230 Gossypium raimondii
Gorai.012G046100 1.0kb upstream 1.0kb upstream 3420 true Chr12: 5773311-5776730 Gossypium raimondii
Gorai.012G046100 1.0kb upstream 1.0kb upstream 1000 false Chr12: 5773311-5774310 Gossypium raimondii
Gorai.012G046100 1.0kb downstream 1.0kb downstream 3420 true Chr12: 5774311-5777730 Gossypium raimondii
Gorai.012G046100 1.0kb downstream 1.0kb downstream 1000 false Chr12: 5776731-5777730 Gossypium raimondii
Gorai.012G046100 2.0kb upstream 2.0kb upstream 4420 true Chr12: 5772311-5776730 Gossypium raimondii
Gorai.012G046100 2.0kb upstream 2.0kb upstream 2000 false Chr12: 5772311-5774310 Gossypium raimondii
Gorai.012G046100 2.0kb downstream 2.0kb downstream 4420 true Chr12: 5774311-5778730 Gossypium raimondii
Gorai.012G046100 2.0kb downstream 2.0kb downstream 2000 false Chr12: 5776731-5778730 Gossypium raimondii
Gorai.012G046100 5.0kb upstream 5.0kb upstream 7420 true Chr12: 5769311-5776730 Gossypium raimondii
Gorai.012G046100 5.0kb upstream 5.0kb upstream 5000 false Chr12: 5769311-5774310 Gossypium raimondii
Gorai.012G046100 5.0kb downstream 5.0kb downstream 7420 true Chr12: 5774311-5781730 Gossypium raimondii
Gorai.012G046100 5.0kb downstream 5.0kb downstream 5000 false Chr12: 5776731-5781730 Gossypium raimondii
Gorai.012G046100 10.0kb upstream 10.0kb upstream 12420 true Chr12: 5764311-5776730 Gossypium raimondii
Gorai.012G046100 10.0kb upstream 10.0kb upstream 10000 false Chr12: 5764311-5774310 Gossypium raimondii
Gorai.012G046100 10.0kb downstream 10.0kb downstream 12420 true Chr12: 5774311-5786730 Gossypium raimondii
Gorai.012G046100 10.0kb downstream 10.0kb downstream 10000 false Chr12: 5776731-5786730 Gossypium raimondii

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123830535 5264 Brassicales-Malvales View MSA
124350722 5266 SBM View MSA
124250769 5268 Malvidae View MSA
124061164 5270 Rosid View MSA
123748112 5271 Pentapetalae View MSA
122788148 5272 Eudicot View MSA
122046323 5273 Angiosperm View MSA
121350065 5274 Embryophyte View MSA
123426386 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain