Gene : Gorai.012G141400 G. raimondii v2.1
Defline:  (1 of 8) PTHR30128:SF8 - PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A1 Genomic Order:  1414
Name:  ? Gorai.012G141400 Secondary Identifier:  ? PAC:26828777
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Graimondii PHOTOALL-PWY Gossypium raimondii pathologic  
Graimondii PWY-101 Gossypium raimondii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Gorai.012G141400 0.5kb upstream 0.5kb upstream 959 true Chr12: 31498754-31499712 Gossypium raimondii
Gorai.012G141400 0.5kb upstream 0.5kb upstream 500 false Chr12: 31498754-31499253 Gossypium raimondii
Gorai.012G141400 0.5kb downstream 0.5kb downstream 959 true Chr12: 31499254-31500212 Gossypium raimondii
Gorai.012G141400 0.5kb downstream 0.5kb downstream 500 false Chr12: 31499713-31500212 Gossypium raimondii
Gorai.012G141400 1.0kb upstream 1.0kb upstream 1459 true Chr12: 31498254-31499712 Gossypium raimondii
Gorai.012G141400 1.0kb upstream 1.0kb upstream 1000 false Chr12: 31498254-31499253 Gossypium raimondii
Gorai.012G141400 1.0kb downstream 1.0kb downstream 1459 true Chr12: 31499254-31500712 Gossypium raimondii
Gorai.012G141400 1.0kb downstream 1.0kb downstream 1000 false Chr12: 31499713-31500712 Gossypium raimondii
Gorai.012G141400 2.0kb upstream 2.0kb upstream 2459 true Chr12: 31497254-31499712 Gossypium raimondii
Gorai.012G141400 2.0kb upstream 2.0kb upstream 2000 false Chr12: 31497254-31499253 Gossypium raimondii
Gorai.012G141400 2.0kb downstream 2.0kb downstream 2459 true Chr12: 31499254-31501712 Gossypium raimondii
Gorai.012G141400 2.0kb downstream 2.0kb downstream 2000 false Chr12: 31499713-31501712 Gossypium raimondii
Gorai.012G141400 5.0kb upstream 5.0kb upstream 5459 true Chr12: 31494254-31499712 Gossypium raimondii
Gorai.012G141400 5.0kb upstream 5.0kb upstream 5000 false Chr12: 31494254-31499253 Gossypium raimondii
Gorai.012G141400 5.0kb downstream 5.0kb downstream 5459 true Chr12: 31499254-31504712 Gossypium raimondii
Gorai.012G141400 5.0kb downstream 5.0kb downstream 5000 false Chr12: 31499713-31504712 Gossypium raimondii
Gorai.012G141400 10.0kb upstream 10.0kb upstream 10459 true Chr12: 31489254-31499712 Gossypium raimondii
Gorai.012G141400 10.0kb upstream 10.0kb upstream 10000 false Chr12: 31489254-31499253 Gossypium raimondii
Gorai.012G141400 10.0kb downstream 10.0kb downstream 10459 true Chr12: 31499254-31509712 Gossypium raimondii
Gorai.012G141400 10.0kb downstream 10.0kb downstream 10000 false Chr12: 31499713-31509712 Gossypium raimondii

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029302 5273 Angiosperm View MSA
123813535 5264 Brassicales-Malvales Singleton cluster - no MSA
124310069 5266 SBM Singleton cluster - no MSA
124254416 5268 Malvidae View MSA
123952926 5270 Rosid View MSA
123753575 5271 Pentapetalae View MSA
122795398 5272 Eudicot View MSA
121350541 5274 Embryophyte View MSA
123381782 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain