Gene : Gorai.012G157700 G. raimondii v2.1
Defline:  (1 of 14) PF00124 - Photosynthetic reaction centre protein (Photo_RC) Genomic Order:  1577
Name:  ? Gorai.012G157700 Secondary Identifier:  ? PAC:26828536
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Graimondii PHOTOALL-PWY Gossypium raimondii pathologic  
Graimondii PWY-101 Gossypium raimondii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Gorai.012G157700 0.5kb upstream 0.5kb upstream 991 true Chr12: 33103282-33104272 Gossypium raimondii
Gorai.012G157700 0.5kb upstream 0.5kb upstream 500 false Chr12: 33103282-33103781 Gossypium raimondii
Gorai.012G157700 0.5kb downstream 0.5kb downstream 991 true Chr12: 33103782-33104772 Gossypium raimondii
Gorai.012G157700 0.5kb downstream 0.5kb downstream 500 false Chr12: 33104273-33104772 Gossypium raimondii
Gorai.012G157700 1.0kb upstream 1.0kb upstream 1491 true Chr12: 33102782-33104272 Gossypium raimondii
Gorai.012G157700 1.0kb upstream 1.0kb upstream 1000 false Chr12: 33102782-33103781 Gossypium raimondii
Gorai.012G157700 1.0kb downstream 1.0kb downstream 1491 true Chr12: 33103782-33105272 Gossypium raimondii
Gorai.012G157700 1.0kb downstream 1.0kb downstream 1000 false Chr12: 33104273-33105272 Gossypium raimondii
Gorai.012G157700 2.0kb upstream 2.0kb upstream 2491 true Chr12: 33101782-33104272 Gossypium raimondii
Gorai.012G157700 2.0kb upstream 2.0kb upstream 2000 false Chr12: 33101782-33103781 Gossypium raimondii
Gorai.012G157700 2.0kb downstream 2.0kb downstream 2491 true Chr12: 33103782-33106272 Gossypium raimondii
Gorai.012G157700 2.0kb downstream 2.0kb downstream 2000 false Chr12: 33104273-33106272 Gossypium raimondii
Gorai.012G157700 5.0kb upstream 5.0kb upstream 5491 true Chr12: 33098782-33104272 Gossypium raimondii
Gorai.012G157700 5.0kb upstream 5.0kb upstream 5000 false Chr12: 33098782-33103781 Gossypium raimondii
Gorai.012G157700 5.0kb downstream 5.0kb downstream 5491 true Chr12: 33103782-33109272 Gossypium raimondii
Gorai.012G157700 5.0kb downstream 5.0kb downstream 5000 false Chr12: 33104273-33109272 Gossypium raimondii
Gorai.012G157700 10.0kb upstream 10.0kb upstream 10491 true Chr12: 33093782-33104272 Gossypium raimondii
Gorai.012G157700 10.0kb upstream 10.0kb upstream 10000 false Chr12: 33093782-33103781 Gossypium raimondii
Gorai.012G157700 10.0kb downstream 10.0kb downstream 10491 true Chr12: 33103782-33114272 Gossypium raimondii
Gorai.012G157700 10.0kb downstream 10.0kb downstream 10000 false Chr12: 33104273-33114272 Gossypium raimondii

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123813497 5264 Brassicales-Malvales Singleton cluster - no MSA
124310034 5266 SBM Singleton cluster - no MSA
124253930 5268 Malvidae View MSA
124074892 5270 Rosid View MSA
123753442 5271 Pentapetalae View MSA
122794783 5272 Eudicot View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain