Gene : Gorai.012G039000 G. raimondii v2.1
Defline:  (1 of 10) 5.4.99.8 - Cycloartenol synthase / 2,3-epoxysqualene--cycloartenol cyclase Genomic Order:  390
Name:  ? Gorai.012G039000 Secondary Identifier:  ? PAC:26828859
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Graimondii PWY-2541 Gossypium raimondii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Gorai.012G039000 0.5kb upstream 0.5kb upstream 4336 true Chr12: 4852829-4857164 Gossypium raimondii
Gorai.012G039000 0.5kb upstream 0.5kb upstream 500 false Chr12: 4856665-4857164 Gossypium raimondii
Gorai.012G039000 0.5kb downstream 0.5kb downstream 4336 true Chr12: 4852329-4856664 Gossypium raimondii
Gorai.012G039000 0.5kb downstream 0.5kb downstream 500 false Chr12: 4852329-4852828 Gossypium raimondii
Gorai.012G039000 1.0kb upstream 1.0kb upstream 4836 true Chr12: 4852829-4857664 Gossypium raimondii
Gorai.012G039000 1.0kb upstream 1.0kb upstream 1000 false Chr12: 4856665-4857664 Gossypium raimondii
Gorai.012G039000 1.0kb downstream 1.0kb downstream 4836 true Chr12: 4851829-4856664 Gossypium raimondii
Gorai.012G039000 1.0kb downstream 1.0kb downstream 1000 false Chr12: 4851829-4852828 Gossypium raimondii
Gorai.012G039000 2.0kb upstream 2.0kb upstream 5836 true Chr12: 4852829-4858664 Gossypium raimondii
Gorai.012G039000 2.0kb upstream 2.0kb upstream 2000 false Chr12: 4856665-4858664 Gossypium raimondii
Gorai.012G039000 2.0kb downstream 2.0kb downstream 5836 true Chr12: 4850829-4856664 Gossypium raimondii
Gorai.012G039000 2.0kb downstream 2.0kb downstream 2000 false Chr12: 4850829-4852828 Gossypium raimondii
Gorai.012G039000 5.0kb upstream 5.0kb upstream 8836 true Chr12: 4852829-4861664 Gossypium raimondii
Gorai.012G039000 5.0kb upstream 5.0kb upstream 5000 false Chr12: 4856665-4861664 Gossypium raimondii
Gorai.012G039000 5.0kb downstream 5.0kb downstream 8836 true Chr12: 4847829-4856664 Gossypium raimondii
Gorai.012G039000 5.0kb downstream 5.0kb downstream 5000 false Chr12: 4847829-4852828 Gossypium raimondii
Gorai.012G039000 10.0kb upstream 10.0kb upstream 13836 true Chr12: 4852829-4866664 Gossypium raimondii
Gorai.012G039000 10.0kb upstream 10.0kb upstream 10000 false Chr12: 4856665-4866664 Gossypium raimondii
Gorai.012G039000 10.0kb downstream 10.0kb downstream 13836 true Chr12: 4842829-4856664 Gossypium raimondii
Gorai.012G039000 10.0kb downstream 10.0kb downstream 10000 false Chr12: 4842829-4852828 Gossypium raimondii

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029665 5273 Angiosperm View MSA
123813551 5264 Brassicales-Malvales Singleton cluster - no MSA
124310083 5266 SBM Singleton cluster - no MSA
124254238 5268 Malvidae View MSA
124074918 5270 Rosid View MSA
123750471 5271 Pentapetalae View MSA
122795887 5272 Eudicot View MSA
121298968 5274 Embryophyte View MSA
123336900 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain