Gene : Gorai.008G098500 G. raimondii v2.1
Defline:  (1 of 12) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) Genomic Order:  985
Name:  ? Gorai.008G098500 Secondary Identifier:  ? PAC:26815511
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Gorai.008G098500 0.5kb upstream 0.5kb upstream 1226 true Chr08: 27929322-27930547 Gossypium raimondii
Gorai.008G098500 0.5kb upstream 0.5kb upstream 500 false Chr08: 27929322-27929821 Gossypium raimondii
Gorai.008G098500 0.5kb downstream 0.5kb downstream 1226 true Chr08: 27929822-27931047 Gossypium raimondii
Gorai.008G098500 0.5kb downstream 0.5kb downstream 500 false Chr08: 27930548-27931047 Gossypium raimondii
Gorai.008G098500 1.0kb upstream 1.0kb upstream 1726 true Chr08: 27928822-27930547 Gossypium raimondii
Gorai.008G098500 1.0kb upstream 1.0kb upstream 1000 false Chr08: 27928822-27929821 Gossypium raimondii
Gorai.008G098500 1.0kb downstream 1.0kb downstream 1726 true Chr08: 27929822-27931547 Gossypium raimondii
Gorai.008G098500 1.0kb downstream 1.0kb downstream 1000 false Chr08: 27930548-27931547 Gossypium raimondii
Gorai.008G098500 2.0kb upstream 2.0kb upstream 2726 true Chr08: 27927822-27930547 Gossypium raimondii
Gorai.008G098500 2.0kb upstream 2.0kb upstream 2000 false Chr08: 27927822-27929821 Gossypium raimondii
Gorai.008G098500 2.0kb downstream 2.0kb downstream 2726 true Chr08: 27929822-27932547 Gossypium raimondii
Gorai.008G098500 2.0kb downstream 2.0kb downstream 2000 false Chr08: 27930548-27932547 Gossypium raimondii
Gorai.008G098500 5.0kb upstream 5.0kb upstream 5726 true Chr08: 27924822-27930547 Gossypium raimondii
Gorai.008G098500 5.0kb upstream 5.0kb upstream 5000 false Chr08: 27924822-27929821 Gossypium raimondii
Gorai.008G098500 5.0kb downstream 5.0kb downstream 5726 true Chr08: 27929822-27935547 Gossypium raimondii
Gorai.008G098500 5.0kb downstream 5.0kb downstream 5000 false Chr08: 27930548-27935547 Gossypium raimondii
Gorai.008G098500 10.0kb upstream 10.0kb upstream 10726 true Chr08: 27919822-27930547 Gossypium raimondii
Gorai.008G098500 10.0kb upstream 10.0kb upstream 10000 false Chr08: 27919822-27929821 Gossypium raimondii
Gorai.008G098500 10.0kb downstream 10.0kb downstream 10726 true Chr08: 27929822-27940547 Gossypium raimondii
Gorai.008G098500 10.0kb downstream 10.0kb downstream 10000 false Chr08: 27930548-27940547 Gossypium raimondii

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123809826 5264 Brassicales-Malvales Singleton cluster - no MSA
124350758 5266 SBM View MSA
124254257 5268 Malvidae View MSA
124074671 5270 Rosid View MSA
123753620 5271 Pentapetalae View MSA
122797847 5272 Eudicot View MSA
122051084 5273 Angiosperm View MSA
123429186 5275 Viridiplantae View MSA
121351752 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain