Gene : Gorai.009G327700 G. raimondii v2.1
Defline:  (1 of 14) PF00124 - Photosynthetic reaction centre protein (Photo_RC) Genomic Order:  3277
Name:  ? Gorai.009G327700 Secondary Identifier:  ? PAC:26770899
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Graimondii PHOTOALL-PWY Gossypium raimondii pathologic  
Graimondii PWY-101 Gossypium raimondii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Gorai.009G327700 0.5kb upstream 0.5kb upstream 1876 true Chr09: 32938127-32940002 Gossypium raimondii
Gorai.009G327700 0.5kb upstream 0.5kb upstream 500 false Chr09: 32938127-32938626 Gossypium raimondii
Gorai.009G327700 0.5kb downstream 0.5kb downstream 1876 true Chr09: 32938627-32940502 Gossypium raimondii
Gorai.009G327700 0.5kb downstream 0.5kb downstream 500 false Chr09: 32940003-32940502 Gossypium raimondii
Gorai.009G327700 1.0kb upstream 1.0kb upstream 2376 true Chr09: 32937627-32940002 Gossypium raimondii
Gorai.009G327700 1.0kb upstream 1.0kb upstream 1000 false Chr09: 32937627-32938626 Gossypium raimondii
Gorai.009G327700 1.0kb downstream 1.0kb downstream 2376 true Chr09: 32938627-32941002 Gossypium raimondii
Gorai.009G327700 1.0kb downstream 1.0kb downstream 1000 false Chr09: 32940003-32941002 Gossypium raimondii
Gorai.009G327700 2.0kb upstream 2.0kb upstream 3376 true Chr09: 32936627-32940002 Gossypium raimondii
Gorai.009G327700 2.0kb upstream 2.0kb upstream 2000 false Chr09: 32936627-32938626 Gossypium raimondii
Gorai.009G327700 2.0kb downstream 2.0kb downstream 3376 true Chr09: 32938627-32942002 Gossypium raimondii
Gorai.009G327700 2.0kb downstream 2.0kb downstream 2000 false Chr09: 32940003-32942002 Gossypium raimondii
Gorai.009G327700 5.0kb upstream 5.0kb upstream 6376 true Chr09: 32933627-32940002 Gossypium raimondii
Gorai.009G327700 5.0kb upstream 5.0kb upstream 5000 false Chr09: 32933627-32938626 Gossypium raimondii
Gorai.009G327700 5.0kb downstream 5.0kb downstream 6376 true Chr09: 32938627-32945002 Gossypium raimondii
Gorai.009G327700 5.0kb downstream 5.0kb downstream 5000 false Chr09: 32940003-32945002 Gossypium raimondii
Gorai.009G327700 10.0kb upstream 10.0kb upstream 11376 true Chr09: 32928627-32940002 Gossypium raimondii
Gorai.009G327700 10.0kb upstream 10.0kb upstream 10000 false Chr09: 32928627-32938626 Gossypium raimondii
Gorai.009G327700 10.0kb downstream 10.0kb downstream 11376 true Chr09: 32938627-32950002 Gossypium raimondii
Gorai.009G327700 10.0kb downstream 10.0kb downstream 10000 false Chr09: 32940003-32950002 Gossypium raimondii

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123811351 5264 Brassicales-Malvales Singleton cluster - no MSA
124307998 5266 SBM Singleton cluster - no MSA
124254128 5268 Malvidae View MSA
124039428 5270 Rosid View MSA
123753555 5271 Pentapetalae View MSA
122797414 5272 Eudicot View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain