Gene : Gorai.005G257400 G. raimondii v2.1
Defline:  (1 of 1) PTHR11777:SF14 - ALANINE--TRNA LIGASE, CHLOROPLASTIC-RELATED Genomic Order:  2574
Name:  ? Gorai.005G257400 Secondary Identifier:  ? PAC:26801816
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Graimondii TRNA-CHARGING-PWY Gossypium raimondii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Gorai.005G257400 0.5kb upstream 0.5kb upstream 6697 true Chr05: 63371283-63377979 Gossypium raimondii
Gorai.005G257400 0.5kb upstream 0.5kb upstream 500 false Chr05: 63371283-63371782 Gossypium raimondii
Gorai.005G257400 0.5kb downstream 0.5kb downstream 6697 true Chr05: 63371783-63378479 Gossypium raimondii
Gorai.005G257400 0.5kb downstream 0.5kb downstream 500 false Chr05: 63377980-63378479 Gossypium raimondii
Gorai.005G257400 1.0kb upstream 1.0kb upstream 7197 true Chr05: 63370783-63377979 Gossypium raimondii
Gorai.005G257400 1.0kb upstream 1.0kb upstream 1000 false Chr05: 63370783-63371782 Gossypium raimondii
Gorai.005G257400 1.0kb downstream 1.0kb downstream 7197 true Chr05: 63371783-63378979 Gossypium raimondii
Gorai.005G257400 1.0kb downstream 1.0kb downstream 1000 false Chr05: 63377980-63378979 Gossypium raimondii
Gorai.005G257400 2.0kb upstream 2.0kb upstream 8197 true Chr05: 63369783-63377979 Gossypium raimondii
Gorai.005G257400 2.0kb upstream 2.0kb upstream 2000 false Chr05: 63369783-63371782 Gossypium raimondii
Gorai.005G257400 2.0kb downstream 2.0kb downstream 8197 true Chr05: 63371783-63379979 Gossypium raimondii
Gorai.005G257400 2.0kb downstream 2.0kb downstream 2000 false Chr05: 63377980-63379979 Gossypium raimondii
Gorai.005G257400 5.0kb upstream 5.0kb upstream 11197 true Chr05: 63366783-63377979 Gossypium raimondii
Gorai.005G257400 5.0kb upstream 5.0kb upstream 5000 false Chr05: 63366783-63371782 Gossypium raimondii
Gorai.005G257400 5.0kb downstream 5.0kb downstream 11197 true Chr05: 63371783-63382979 Gossypium raimondii
Gorai.005G257400 5.0kb downstream 5.0kb downstream 5000 false Chr05: 63377980-63382979 Gossypium raimondii
Gorai.005G257400 10.0kb upstream 10.0kb upstream 16197 true Chr05: 63361783-63377979 Gossypium raimondii
Gorai.005G257400 10.0kb upstream 10.0kb upstream 10000 false Chr05: 63361783-63371782 Gossypium raimondii
Gorai.005G257400 10.0kb downstream 10.0kb downstream 16197 true Chr05: 63371783-63387979 Gossypium raimondii
Gorai.005G257400 10.0kb downstream 10.0kb downstream 10000 false Chr05: 63377980-63387979 Gossypium raimondii

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123829787 5264 Brassicales-Malvales View MSA
124345364 5266 SBM View MSA
124242500 5268 Malvidae View MSA
124064161 5270 Rosid View MSA
123740814 5271 Pentapetalae View MSA
122788872 5272 Eudicot View MSA
122048095 5273 Angiosperm View MSA
121348703 5274 Embryophyte View MSA
123425032 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain