Gene : Gorai.006G223400 G. raimondii v2.1
Defline:  (1 of 1) PTHR11946:SF86 - METHIONINE--TRNA LIGASE, CYTOPLASMIC Genomic Order:  2234
Name:  ? Gorai.006G223400 Secondary Identifier:  ? PAC:26834157
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Graimondii TRNA-CHARGING-PWY Gossypium raimondii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Gorai.006G223400 0.5kb upstream 0.5kb upstream 7086 true Chr06: 47561030-47568115 Gossypium raimondii
Gorai.006G223400 0.5kb upstream 0.5kb upstream 500 false Chr06: 47567616-47568115 Gossypium raimondii
Gorai.006G223400 0.5kb downstream 0.5kb downstream 7086 true Chr06: 47560530-47567615 Gossypium raimondii
Gorai.006G223400 0.5kb downstream 0.5kb downstream 500 false Chr06: 47560530-47561029 Gossypium raimondii
Gorai.006G223400 1.0kb upstream 1.0kb upstream 7586 true Chr06: 47561030-47568615 Gossypium raimondii
Gorai.006G223400 1.0kb upstream 1.0kb upstream 1000 false Chr06: 47567616-47568615 Gossypium raimondii
Gorai.006G223400 1.0kb downstream 1.0kb downstream 7586 true Chr06: 47560030-47567615 Gossypium raimondii
Gorai.006G223400 1.0kb downstream 1.0kb downstream 1000 false Chr06: 47560030-47561029 Gossypium raimondii
Gorai.006G223400 2.0kb upstream 2.0kb upstream 8586 true Chr06: 47561030-47569615 Gossypium raimondii
Gorai.006G223400 2.0kb upstream 2.0kb upstream 2000 false Chr06: 47567616-47569615 Gossypium raimondii
Gorai.006G223400 2.0kb downstream 2.0kb downstream 8586 true Chr06: 47559030-47567615 Gossypium raimondii
Gorai.006G223400 2.0kb downstream 2.0kb downstream 2000 false Chr06: 47559030-47561029 Gossypium raimondii
Gorai.006G223400 5.0kb upstream 5.0kb upstream 11586 true Chr06: 47561030-47572615 Gossypium raimondii
Gorai.006G223400 5.0kb upstream 5.0kb upstream 5000 false Chr06: 47567616-47572615 Gossypium raimondii
Gorai.006G223400 5.0kb downstream 5.0kb downstream 11586 true Chr06: 47556030-47567615 Gossypium raimondii
Gorai.006G223400 5.0kb downstream 5.0kb downstream 5000 false Chr06: 47556030-47561029 Gossypium raimondii
Gorai.006G223400 10.0kb upstream 10.0kb upstream 16586 true Chr06: 47561030-47577615 Gossypium raimondii
Gorai.006G223400 10.0kb upstream 10.0kb upstream 10000 false Chr06: 47567616-47577615 Gossypium raimondii
Gorai.006G223400 10.0kb downstream 10.0kb downstream 16586 true Chr06: 47551030-47567615 Gossypium raimondii
Gorai.006G223400 10.0kb downstream 10.0kb downstream 10000 false Chr06: 47551030-47561029 Gossypium raimondii

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123828718 5264 Brassicales-Malvales View MSA
124338406 5266 SBM View MSA
124247313 5268 Malvidae View MSA
124066402 5270 Rosid View MSA
123739463 5271 Pentapetalae View MSA
122793532 5272 Eudicot View MSA
122041539 5273 Angiosperm View MSA
121348816 5274 Embryophyte View MSA
123428788 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain