Gene : Gorai.006G068500 G. raimondii v2.1
Defline:  (1 of 8) PTHR30128:SF8 - PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A1 Genomic Order:  685
Name:  ? Gorai.006G068500 Secondary Identifier:  ? PAC:26831164
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Graimondii PHOTOALL-PWY Gossypium raimondii pathologic  
Graimondii PWY-101 Gossypium raimondii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Gorai.006G068500 0.5kb upstream 0.5kb upstream 1889 true Chr06: 27761506-27763394 Gossypium raimondii
Gorai.006G068500 0.5kb upstream 0.5kb upstream 500 false Chr06: 27762895-27763394 Gossypium raimondii
Gorai.006G068500 0.5kb downstream 0.5kb downstream 1889 true Chr06: 27761006-27762894 Gossypium raimondii
Gorai.006G068500 0.5kb downstream 0.5kb downstream 500 false Chr06: 27761006-27761505 Gossypium raimondii
Gorai.006G068500 1.0kb upstream 1.0kb upstream 2389 true Chr06: 27761506-27763894 Gossypium raimondii
Gorai.006G068500 1.0kb upstream 1.0kb upstream 1000 false Chr06: 27762895-27763894 Gossypium raimondii
Gorai.006G068500 1.0kb downstream 1.0kb downstream 2389 true Chr06: 27760506-27762894 Gossypium raimondii
Gorai.006G068500 1.0kb downstream 1.0kb downstream 1000 false Chr06: 27760506-27761505 Gossypium raimondii
Gorai.006G068500 2.0kb upstream 2.0kb upstream 3389 true Chr06: 27761506-27764894 Gossypium raimondii
Gorai.006G068500 2.0kb upstream 2.0kb upstream 2000 false Chr06: 27762895-27764894 Gossypium raimondii
Gorai.006G068500 2.0kb downstream 2.0kb downstream 3389 true Chr06: 27759506-27762894 Gossypium raimondii
Gorai.006G068500 2.0kb downstream 2.0kb downstream 2000 false Chr06: 27759506-27761505 Gossypium raimondii
Gorai.006G068500 5.0kb upstream 5.0kb upstream 6389 true Chr06: 27761506-27767894 Gossypium raimondii
Gorai.006G068500 5.0kb upstream 5.0kb upstream 5000 false Chr06: 27762895-27767894 Gossypium raimondii
Gorai.006G068500 5.0kb downstream 5.0kb downstream 6389 true Chr06: 27756506-27762894 Gossypium raimondii
Gorai.006G068500 5.0kb downstream 5.0kb downstream 5000 false Chr06: 27756506-27761505 Gossypium raimondii
Gorai.006G068500 10.0kb upstream 10.0kb upstream 11389 true Chr06: 27761506-27772894 Gossypium raimondii
Gorai.006G068500 10.0kb upstream 10.0kb upstream 10000 false Chr06: 27762895-27772894 Gossypium raimondii
Gorai.006G068500 10.0kb downstream 10.0kb downstream 11389 true Chr06: 27751506-27762894 Gossypium raimondii
Gorai.006G068500 10.0kb downstream 10.0kb downstream 10000 false Chr06: 27751506-27761505 Gossypium raimondii

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029302 5273 Angiosperm View MSA
123807891 5264 Brassicales-Malvales Singleton cluster - no MSA
124304741 5266 SBM Singleton cluster - no MSA
124256864 5268 Malvidae View MSA
123953751 5270 Rosid View MSA
123753251 5271 Pentapetalae View MSA
122775013 5272 Eudicot View MSA
121350541 5274 Embryophyte View MSA
123381782 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain