Gene : Gorai.007G117800 G. raimondii v2.1
Defline:  (1 of 1) PTHR10742:SF294 - PROTOPORPHYRINOGEN OXIDASE 1, CHLOROPLASTIC Genomic Order:  1178
Name:  ? Gorai.007G117800 Secondary Identifier:  ? PAC:26784493
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Graimondii CHLOROPHYLL-SYN Gossypium raimondii pathologic  
Graimondii HEME-BIOSYNTHESIS-II Gossypium raimondii pathologic  
Graimondii PWY-5918 Gossypium raimondii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Gorai.007G117800 0.5kb upstream 0.5kb upstream 4809 true Chr07: 9213576-9218384 Gossypium raimondii
Gorai.007G117800 0.5kb upstream 0.5kb upstream 500 false Chr07: 9217885-9218384 Gossypium raimondii
Gorai.007G117800 0.5kb downstream 0.5kb downstream 4809 true Chr07: 9213076-9217884 Gossypium raimondii
Gorai.007G117800 0.5kb downstream 0.5kb downstream 500 false Chr07: 9213076-9213575 Gossypium raimondii
Gorai.007G117800 1.0kb upstream 1.0kb upstream 5309 true Chr07: 9213576-9218884 Gossypium raimondii
Gorai.007G117800 1.0kb upstream 1.0kb upstream 1000 false Chr07: 9217885-9218884 Gossypium raimondii
Gorai.007G117800 1.0kb downstream 1.0kb downstream 5309 true Chr07: 9212576-9217884 Gossypium raimondii
Gorai.007G117800 1.0kb downstream 1.0kb downstream 1000 false Chr07: 9212576-9213575 Gossypium raimondii
Gorai.007G117800 2.0kb upstream 2.0kb upstream 6309 true Chr07: 9213576-9219884 Gossypium raimondii
Gorai.007G117800 2.0kb upstream 2.0kb upstream 2000 false Chr07: 9217885-9219884 Gossypium raimondii
Gorai.007G117800 2.0kb downstream 2.0kb downstream 6309 true Chr07: 9211576-9217884 Gossypium raimondii
Gorai.007G117800 2.0kb downstream 2.0kb downstream 2000 false Chr07: 9211576-9213575 Gossypium raimondii
Gorai.007G117800 5.0kb upstream 5.0kb upstream 9309 true Chr07: 9213576-9222884 Gossypium raimondii
Gorai.007G117800 5.0kb upstream 5.0kb upstream 5000 false Chr07: 9217885-9222884 Gossypium raimondii
Gorai.007G117800 5.0kb downstream 5.0kb downstream 9309 true Chr07: 9208576-9217884 Gossypium raimondii
Gorai.007G117800 5.0kb downstream 5.0kb downstream 5000 false Chr07: 9208576-9213575 Gossypium raimondii
Gorai.007G117800 10.0kb upstream 10.0kb upstream 14309 true Chr07: 9213576-9227884 Gossypium raimondii
Gorai.007G117800 10.0kb upstream 10.0kb upstream 10000 false Chr07: 9217885-9227884 Gossypium raimondii
Gorai.007G117800 10.0kb downstream 10.0kb downstream 14309 true Chr07: 9203576-9217884 Gossypium raimondii
Gorai.007G117800 10.0kb downstream 10.0kb downstream 10000 false Chr07: 9203576-9213575 Gossypium raimondii

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123832763 5264 Brassicales-Malvales View MSA
124343518 5266 SBM View MSA
124242274 5268 Malvidae View MSA
124065931 5270 Rosid View MSA
123747490 5271 Pentapetalae View MSA
122787686 5272 Eudicot View MSA
122041725 5273 Angiosperm View MSA
121347394 5274 Embryophyte View MSA
123424000 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain